Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_M24
         (901 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0369 - 8012470-8013120                                           29   3.8  
03_02_0738 - 10824121-10825572                                         29   6.7  
02_05_0686 - 30900748-30902167,30903442-30904742                       28   8.8  

>09_02_0369 - 8012470-8013120
          Length = 216

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +2

Query: 293 PXPPKXXXKKXPPXFFPXXPPXKTPPXK 376
           P PP     K PP F+P   P + PP +
Sbjct: 63  PPPPDEPPLKPPPSFYPAVLPPEPPPPR 90


>03_02_0738 - 10824121-10825572
          Length = 483

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = +2

Query: 290 SPXPPKXXXKKXPPXFFPXXPPXKTPP 370
           SP PP       PP  FP  PP  + P
Sbjct: 77  SPPPPSPPSSSPPPLSFPPPPPPPSSP 103


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = +2

Query: 293 PXPPKXXXKKXPPXFFPXXPPXKTPP 370
           P PPK      PP   P  PP K PP
Sbjct: 329 PPPPKAAPPPPPPKGPPPPPPAKGPP 354


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,424,168
Number of Sequences: 37544
Number of extensions: 150832
Number of successful extensions: 323
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 303
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)