Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_M23
         (900 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   3.3  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   3.3  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   3.3  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   3.3  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   4.3  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   5.7  
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    22   7.5  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +2

Query: 86  YKFLDDFLSNFYSKFCNHSL*CRWMLTTTAQTWCRLFV 199
           Y F +     F + F +H     W+L   +QTW  L +
Sbjct: 444 YLFFESPPVVFLNDFISHQHAWIWLLWLLSQTWITLHI 481


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +2

Query: 86  YKFLDDFLSNFYSKFCNHSL*CRWMLTTTAQTWCRLFV 199
           Y F +     F + F +H     W+L   +QTW  L +
Sbjct: 444 YLFFESPPVVFLNDFISHQHAWIWLLWLLSQTWITLHI 481


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +2

Query: 86  YKFLDDFLSNFYSKFCNHSL*CRWMLTTTAQTWCRLFV 199
           Y F +     F + F +H     W+L   +QTW  L +
Sbjct: 444 YLFFESPPVVFLNDFISHQHAWIWLLWLLSQTWITLHI 481


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +2

Query: 86  YKFLDDFLSNFYSKFCNHSL*CRWMLTTTAQTWCRLFV 199
           Y F +     F + F +H     W+L   +QTW  L +
Sbjct: 444 YLFFESPPVVFLNDFISHQHAWIWLLWLLSQTWITLHI 481


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
 Frame = -1

Query: 219 SAQSLQLTNKRHHVCAVVVSIHRHHNEWLQ-NFE*KFERKSSKNLYN**QGTTLTVCKNP 43
           S QS Q    R +   +V     +HN     N E     KS K   +    TTLT C +P
Sbjct: 79  SYQSPQTQPARFYSTPIVPHFAYNHNPLTPPNSEPLVSPKSEKEEKD--METTLTPCASP 136

Query: 42  NLK 34
           N K
Sbjct: 137 NRK 139


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -1

Query: 153 RHHNEWLQNFE*KFERKSSKNLYN 82
           RHH +W  + +  FE+  +   YN
Sbjct: 71  RHHGQWNYSPDNHFEQYPNPTYYN 94


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -3

Query: 427 YCTRLVFQYSAV 392
           YCT L++ Y+A+
Sbjct: 54  YCTHLIYGYAAI 65


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,463
Number of Sequences: 336
Number of extensions: 3255
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25030786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)