Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_M23
         (900 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0124 - 16942492-16945032,16945478-16945572,16945966-169460...    30   2.2  
04_04_1099 - 30886361-30886591,30886739-30886941,30887030-308875...    29   6.7  
04_03_0289 + 13972020-13972077,13972444-13973301,13973850-139742...    29   6.7  

>06_03_0124 -
           16942492-16945032,16945478-16945572,16945966-16946076,
           16946142-16946229
          Length = 944

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +2

Query: 44  GFLQTVSVVPCHQLYKFLDDFLSNFYSK 127
           GFLQT+S  P    Y+ L D  SNF +K
Sbjct: 598 GFLQTISGAPVRFTYRELQDATSNFCNK 625


>04_04_1099 -
           30886361-30886591,30886739-30886941,30887030-30887555,
           30887751-30887988,30888592-30888695,30888784-30889059,
           30889216-30889218
          Length = 526

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 110 KENHPKTYTIDDKALHSPFAKTQILRIPYS 21
           +E+   TY++DD  L S F + QIL + Y+
Sbjct: 3   EEDQSATYSVDDALLSSGFGRYQILILSYA 32


>04_03_0289 +
           13972020-13972077,13972444-13973301,13973850-13974235,
           13974249-13974323,13975824-13976139,13976284-13977113
          Length = 840

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = +3

Query: 240 SKLSFSTTVCPSKVLTQK*RSYTTNKENCCAEHKPDVTWPTFESKLVR 383
           S +   T  CP++ +T+K      N   CC     + T   F+ K V+
Sbjct: 168 SAVRLCTVTCPNEEITEKVARQNCNGTGCCTIELFEATLSAFQFKFVQ 215


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,650,798
Number of Sequences: 37544
Number of extensions: 331933
Number of successful extensions: 658
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)