Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_M21
         (1025 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    27   5.7  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    26   9.9  

>SPCC1322.12c |bub1||serine/threonine protein kinase
           Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 307 TTITSFYNSRKRPAADDIATTKSKIAH 387
           TT T+F N+++RP   +I+ T  K  H
Sbjct: 514 TTSTTFANAKRRPEDSNISPTNPKKLH 540


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
           subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +1

Query: 196 H*GIVKIAAIQSFH--YFH*KLVINHNFSKRQAISIMSQTTITSFYNSRKRPAADDI 360
           H G VK+A +  FH  YF   L I  N  K  +  ++S      F    +RP  D++
Sbjct: 79  HFGYVKLA-LPVFHIGYFKATLTILQNICKDCSSVLLSDQEKRQFLKDLRRPGIDNL 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,585,684
Number of Sequences: 5004
Number of extensions: 39225
Number of successful extensions: 78
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 535245848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)