Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_M19
(881 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9H9S3 Cluster: Protein transport protein Sec61 subunit... 235 1e-60
UniRef50_Q5KC69 Cluster: Protein transporter, putative; n=4; Euk... 173 4e-42
UniRef50_A3BXT8 Cluster: Putative uncharacterized protein; n=1; ... 161 2e-38
UniRef50_A0CU87 Cluster: Chromosome undetermined scaffold_28, wh... 148 2e-34
UniRef50_Q22MG2 Cluster: Preprotein translocase, SecY subunit co... 143 5e-33
UniRef50_UPI0000499503 Cluster: Sec61 alpha subunit; n=3; Entamo... 132 1e-29
UniRef50_A3DND0 Cluster: Preprotein translocase, SecY subunit; n... 99 2e-19
UniRef50_A2DZB2 Cluster: Preprotein translocase, SecY subunit, p... 97 7e-19
UniRef50_UPI00015BB126 Cluster: protein translocase subunit secY... 96 9e-19
UniRef50_A1RWR3 Cluster: Preprotein translocase, SecY subunit; n... 96 1e-18
UniRef50_Q7QS32 Cluster: GLP_661_10951_12423; n=1; Giardia lambl... 93 1e-17
UniRef50_A6UWW1 Cluster: Preprotein translocase, SecY subunit; n... 92 1e-17
UniRef50_A0RUE4 Cluster: Preprotein translocase secY subunit; n=... 92 2e-17
UniRef50_A0B9U7 Cluster: Preprotein translocase, SecY subunit; n... 91 3e-17
UniRef50_Q8U019 Cluster: Preprotein translocase subunit secY; n=... 90 6e-17
UniRef50_A2BME2 Cluster: Preprotein translocase subunit secY; n=... 90 8e-17
UniRef50_Q9UX84 Cluster: Preprotein translocase subunit secY; n=... 90 8e-17
UniRef50_A3H5A9 Cluster: Preprotein translocase secY subunit; n=... 89 2e-16
UniRef50_O28377 Cluster: Preprotein translocase subunit secY; n=... 88 3e-16
UniRef50_P28541 Cluster: Preprotein translocase subunit secY; n=... 86 1e-15
UniRef50_Q2FSG8 Cluster: Preprotein translocase secY subunit; n=... 85 2e-15
UniRef50_Q9YDD0 Cluster: Preprotein translocase subunit secY; n=... 85 2e-15
UniRef50_Q6L1A4 Cluster: Preprotein translocase secY subunit; n=... 84 5e-15
UniRef50_P38353 Cluster: Sec sixty-one protein homolog; n=7; Sac... 84 5e-15
UniRef50_A3GFV9 Cluster: Protein involved in co-translational pa... 80 8e-14
UniRef50_Q2QAQ7 Cluster: Preprotein translocase subunit SecY; n=... 78 3e-13
UniRef50_O42965 Cluster: Uncharacterized protein C19G7.17; n=1; ... 76 1e-12
UniRef50_Q6C854 Cluster: Similar to sp|P78979 Yarrowia lipolytic... 73 7e-12
UniRef50_Q0J0G0 Cluster: Os09g0512000 protein; n=2; Oryza sativa... 68 3e-10
UniRef50_A2ZMY6 Cluster: Putative uncharacterized protein; n=3; ... 65 2e-09
UniRef50_Q2QM98 Cluster: Preprotein translocase, SecY subunit co... 64 3e-09
UniRef50_A2ZMZ3 Cluster: Putative uncharacterized protein; n=2; ... 62 1e-08
UniRef50_Q8ZT51 Cluster: Preprotein translocase secY subunit; n=... 60 7e-08
UniRef50_Q8SQQ4 Cluster: ER PROTEIN-TRANSLOCATION COMPLEX; n=2; ... 52 1e-05
UniRef50_Q74NB9 Cluster: NEQ168; n=1; Nanoarchaeum equitans|Rep:... 51 3e-05
UniRef50_O13579 Cluster: Putative uncharacterized protein YLR379... 51 3e-05
UniRef50_Q839E4 Cluster: Preprotein translocase, SecY subunit; n... 36 1.4
UniRef50_A1RJU5 Cluster: Putative uncharacterized protein; n=7; ... 36 1.4
UniRef50_Q084M0 Cluster: Putative uncharacterized protein; n=1; ... 36 1.8
UniRef50_Q18CH6 Cluster: Preprotein translocase SecY subunit pre... 34 5.5
UniRef50_A1S616 Cluster: Putative uncharacterized protein; n=1; ... 34 5.5
UniRef50_Q6KI36 Cluster: Preprotein translocase secY subunit; n=... 33 7.3
UniRef50_UPI00006CDD72 Cluster: hypothetical protein TTHERM_0029... 33 9.6
UniRef50_Q4Q5C4 Cluster: Putative uncharacterized protein; n=2; ... 33 9.6
UniRef50_P38375 Cluster: Preprotein translocase subunit secY; n=... 33 9.6
>UniRef50_Q9H9S3 Cluster: Protein transport protein Sec61 subunit
alpha isoform 2; n=176; Eukaryota|Rep: Protein transport
protein Sec61 subunit alpha isoform 2 - Homo sapiens
(Human)
Length = 476
Score = 235 bits (575), Expect = 1e-60
Identities = 111/115 (96%), Positives = 114/115 (99%)
Frame = +1
Query: 160 MGIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 339
MGIKFLEVIKPFC++LPEI KPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD
Sbjct: 1 MGIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 60
Query: 340 PFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGA 504
PFYW+RVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGA
Sbjct: 61 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGA 115
>UniRef50_Q5KC69 Cluster: Protein transporter, putative; n=4;
Eukaryota|Rep: Protein transporter, putative -
Cryptococcus neoformans (Filobasidiella neoformans)
Length = 478
Score = 173 bits (422), Expect = 4e-42
Identities = 79/116 (68%), Positives = 98/116 (84%), Gaps = 1/116 (0%)
Frame = +1
Query: 160 MGIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 339
MG +FLE+++PF SILPE+ PE+K+ F K+ WTA+TL IFLVC Q+PL+GIMSSDS+D
Sbjct: 1 MGFRFLELVRPFMSILPEVTAPEKKVVFNHKIAWTAVTLLIFLVCSQVPLYGIMSSDSSD 60
Query: 340 PFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPK-DRALFNGA 504
P YW+R ILASNRGTLMELGI+PIVTSG+IMQLLAGA++I+V + K DRALF A
Sbjct: 61 PLYWLRAILASNRGTLMELGITPIVTSGMIMQLLAGAQLIDVDFSLKDDRALFGAA 116
>UniRef50_A3BXT8 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (japonica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. japonica
(Rice)
Length = 377
Score = 161 bits (392), Expect = 2e-38
Identities = 74/115 (64%), Positives = 96/115 (83%), Gaps = 1/115 (0%)
Frame = +1
Query: 163 GIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADP 342
G + L +++PF + LPE+ +RKI FREKV++T I+LFIFLVC Q+PL+GI S+ ADP
Sbjct: 4 GFRVLHLVRPFLAFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADP 63
Query: 343 FYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPK-DRALFNGA 504
FYW+RVILASNRGT+MELGI+PIVTSG++MQLL G+KIIEV ++ + DRAL NGA
Sbjct: 64 FYWMRVILASNRGTVMELGITPIVTSGMVMQLLVGSKIIEVDNSVREDRALLNGA 118
>UniRef50_A0CU87 Cluster: Chromosome undetermined scaffold_28, whole
genome shotgun sequence; n=11; Eukaryota|Rep: Chromosome
undetermined scaffold_28, whole genome shotgun sequence
- Paramecium tetraurelia
Length = 474
Score = 148 bits (358), Expect = 2e-34
Identities = 66/113 (58%), Positives = 90/113 (79%), Gaps = 1/113 (0%)
Frame = +1
Query: 169 KFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFY 348
K L ++P +I+P++A+PER+I F+ + LWTAI ++L+C QIPL+GI S + DPFY
Sbjct: 6 KILNYMRPAMAIIPDVAEPERRILFKYRALWTAIATLLYLICSQIPLYGIYKSSAGDPFY 65
Query: 349 WIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPK-DRALFNGA 504
W+RVILASNRGTLMELGISP+VT+ +IMQLLAGAK+I+V K D+ L++GA
Sbjct: 66 WMRVILASNRGTLMELGISPMVTASMIMQLLAGAKLIDVDQNVKEDKQLYSGA 118
>UniRef50_Q22MG2 Cluster: Preprotein translocase, SecY subunit
containing protein; n=1; Tetrahymena thermophila
SB210|Rep: Preprotein translocase, SecY subunit
containing protein - Tetrahymena thermophila SB210
Length = 551
Score = 143 bits (347), Expect = 5e-33
Identities = 68/132 (51%), Positives = 98/132 (74%), Gaps = 3/132 (2%)
Frame = +1
Query: 118 VNILVRIVKSQ*IKMGI-KFLEVIKPFCSILPEIAKPERKI-QFREKVLWTAITLFIFLV 291
+ IL I K + IK + + LE++ P +++PE+ KP +KI FR + +WTAI + I+LV
Sbjct: 61 IKILQYIKKRKTIKQNMSRILEILAPAINLIPEVEKPIKKILPFRSRAMWTAIVILIYLV 120
Query: 292 CCQIPLFGIMSSDSADPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVG- 468
QIPLFG++S+ ADPFYW+RVILASNRGT+MELGISP VT+G++MQLL GA+I+ +
Sbjct: 121 ASQIPLFGVVSNAGADPFYWLRVILASNRGTIMELGISPTVTAGMVMQLLVGAQILNIDQ 180
Query: 469 DTPKDRALFNGA 504
+ P R+L+ G+
Sbjct: 181 NDPVQRSLYEGS 192
>UniRef50_UPI0000499503 Cluster: Sec61 alpha subunit; n=3; Entamoeba
histolytica HM-1:IMSS|Rep: Sec61 alpha subunit -
Entamoeba histolytica HM-1:IMSS
Length = 447
Score = 132 bits (318), Expect = 1e-29
Identities = 62/116 (53%), Positives = 85/116 (73%)
Frame = +1
Query: 160 MGIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 339
MG+ F VI+P S++P I +P +KI F+EK++WT ITL +FLVC QIPL G + D
Sbjct: 1 MGV-FFNVIRPIVSLIPTINEPTKKIGFKEKLMWTGITLLVFLVCSQIPLIGTDIVGN-D 58
Query: 340 PFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAS 507
PFYW+R+++ASNRG+LMELGISPIVT+ ++MQLL GAKII V ++ ++ S
Sbjct: 59 PFYWMRLVMASNRGSLMELGISPIVTASMVMQLLQGAKIISVDMDNQEERMYGDPS 114
>UniRef50_A3DND0 Cluster: Preprotein translocase, SecY subunit; n=1;
Staphylothermus marinus F1|Rep: Preprotein translocase,
SecY subunit - Staphylothermus marinus (strain ATCC
43588 / DSM 3639 / F1)
Length = 476
Score = 98.7 bits (235), Expect = 2e-19
Identities = 46/111 (41%), Positives = 68/111 (61%), Gaps = 1/111 (0%)
Frame = +1
Query: 175 LEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWI 354
++++ +P + KP+ K E++LWTAI L ++++ PL+GI + +
Sbjct: 4 IDLMAKIADYIPTVEKPKAKPGLYERLLWTAIALIVYVIMANTPLYGISVTGGGQQILLV 63
Query: 355 RVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVG-DTPKDRALFNGA 504
++I AS RGTLMELGI PIVT+GLIMQ+L GAK+I + P DR F A
Sbjct: 64 QIIFASRRGTLMELGIGPIVTAGLIMQILVGAKMINLDMSNPDDRRRFTAA 114
>UniRef50_A2DZB2 Cluster: Preprotein translocase, SecY subunit,
putative; n=5; Trichomonas vaginalis G3|Rep: Preprotein
translocase, SecY subunit, putative - Trichomonas
vaginalis G3
Length = 484
Score = 96.7 bits (230), Expect = 7e-19
Identities = 42/116 (36%), Positives = 74/116 (63%), Gaps = 1/116 (0%)
Frame = +1
Query: 160 MGIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 339
MG L+ I+P ++P + +P +K+ R+++ +T +L ++L+C +PL+G+ + D
Sbjct: 1 MGFDILKSIRPVLELMPNVPRPNKKVPIRKRLFYTFASLAVYLICTLVPLYGVQKTAGDD 60
Query: 340 PFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDT-PKDRALFNGA 504
P +R++ AS++ +LME GISPIVTSG+I+Q L +I + P+ ALF+ A
Sbjct: 61 PMQHLRILTASSKYSLMEFGISPIVTSGMILQFLCSFGLINRNPSDPEASALFDAA 116
>UniRef50_UPI00015BB126 Cluster: protein translocase subunit
secY/sec61 alpha; n=1; Ignicoccus hospitalis KIN4/I|Rep:
protein translocase subunit secY/sec61 alpha -
Ignicoccus hospitalis KIN4/I
Length = 479
Score = 96.3 bits (229), Expect = 9e-19
Identities = 48/113 (42%), Positives = 75/113 (66%), Gaps = 1/113 (0%)
Frame = +1
Query: 160 MGIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 339
+G K LEV+ + +P + +P+RKI +++ WTA+ L +L+ IPL G+ S +
Sbjct: 4 LGRKALEVLAEIGTYVPAVPRPKRKINLYKRLTWTALALVAYLMMSNIPLPGVSVQTSFN 63
Query: 340 PFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDT-PKDRALF 495
+ ++ A+N GTLM+LGI PIVT+GL++QLL GAKII++ T P+D+ LF
Sbjct: 64 -LLLMNIVFAANAGTLMQLGIGPIVTAGLVLQLLVGAKIIDLDLTDPEDKKLF 115
>UniRef50_A1RWR3 Cluster: Preprotein translocase, SecY subunit; n=1;
Thermofilum pendens Hrk 5|Rep: Preprotein translocase,
SecY subunit - Thermofilum pendens (strain Hrk 5)
Length = 476
Score = 95.9 bits (228), Expect = 1e-18
Identities = 51/117 (43%), Positives = 73/117 (62%), Gaps = 3/117 (2%)
Frame = +1
Query: 160 MGIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGI--MSSDS 333
MG+K E + LPEI KP RK E++LWTA+ L + V Q PL+GI + +
Sbjct: 1 MGLK--ESLDSVFRFLPEIEKPRRKPPLSERLLWTALVLVAYFVMGQTPLYGIPRQTQGT 58
Query: 334 ADPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVG-DTPKDRALFNG 501
++RV++AS RGTL+ELGI PIVTSG++ +LL G++I+ + TP+ R F G
Sbjct: 59 LGALEFLRVVMASKRGTLIELGIGPIVTSGIVWELLVGSRIVNLDLTTPEGRRTFAG 115
>UniRef50_Q7QS32 Cluster: GLP_661_10951_12423; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_661_10951_12423 - Giardia lamblia
ATCC 50803
Length = 490
Score = 92.7 bits (220), Expect = 1e-17
Identities = 38/101 (37%), Positives = 65/101 (64%)
Frame = +1
Query: 157 KMGIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSA 336
+M +L+V+ P+ +LP + K + ++F K L+T + L ++L Q+PL+G+ SS
Sbjct: 18 RMVATWLKVLDPWARMLPSVEKAPKTVRFTTKGLYTFLALIVYLTASQVPLYGLHSSIRK 77
Query: 337 DPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKII 459
DP +W+R I A RG+LMELGI P +TS +++L +K++
Sbjct: 78 DPLFWLRSIFAGQRGSLMELGIGPTITSSFFLKILISSKVL 118
>UniRef50_A6UWW1 Cluster: Preprotein translocase, SecY subunit; n=2;
Methanococcus|Rep: Preprotein translocase, SecY subunit
- Methanococcus aeolicus Nankai-3
Length = 443
Score = 92.3 bits (219), Expect = 1e-17
Identities = 45/112 (40%), Positives = 75/112 (66%), Gaps = 1/112 (0%)
Frame = +1
Query: 169 KFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFY 348
+FL+ I+P +PE+ +P R+I F+EK+ WTA+ L ++ + I ++ ++ A F
Sbjct: 3 EFLKKIRPILEYIPEVQRPIREITFKEKLKWTALVLIVYFLMGTIDIYTAGATIPAQ-FE 61
Query: 349 WIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVG-DTPKDRALFNG 501
+++ I AS GTL+ LGI PIVT+G+IMQLL G+++I++ P++RA F G
Sbjct: 62 YLQTIFASKIGTLITLGIGPIVTAGIIMQLLVGSELIKLDLSKPENRASFQG 113
>UniRef50_A0RUE4 Cluster: Preprotein translocase secY subunit; n=2;
Thermoprotei|Rep: Preprotein translocase secY subunit -
Cenarchaeum symbiosum
Length = 478
Score = 91.9 bits (218), Expect = 2e-17
Identities = 47/114 (41%), Positives = 75/114 (65%), Gaps = 1/114 (0%)
Frame = +1
Query: 169 KFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFY 348
K + V +P+ LP++ KP++K+ + ++LW + L I++V Q PLFG + D
Sbjct: 12 KMVLVAEPY---LPQVPKPKKKLSLQTRLLWCGLALLIYMVMAQTPLFGATVPEF-DFLA 67
Query: 349 WIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVG-DTPKDRALFNGAS 507
+ RVI AS +GTL+ELGI PIVT+GL+MQLL G++I++ P++R +F A+
Sbjct: 68 FARVIFASQQGTLVELGIGPIVTAGLLMQLLRGSEILKFDFKKPEERGIFQTAT 121
>UniRef50_A0B9U7 Cluster: Preprotein translocase, SecY subunit; n=6;
Euryarchaeota|Rep: Preprotein translocase, SecY subunit
- Methanosaeta thermophila (strain DSM 6194 / PT)
(Methanothrixthermophila (strain DSM 6194 / PT))
Length = 537
Score = 91.1 bits (216), Expect = 3e-17
Identities = 46/111 (41%), Positives = 68/111 (61%), Gaps = 1/111 (0%)
Frame = +1
Query: 172 FLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYW 351
F I+PF LP + +P + F+ K+ WT L ++ V IPLFG+ S S D F +
Sbjct: 6 FFYAIEPFVRRLPAVERPAGHVHFKRKLGWTVGILLLYFVLSNIPLFGL-SKHSIDLFGY 64
Query: 352 IRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVG-DTPKDRALFNG 501
R A + G+LM LGI PIVT+ +++QLL GA+II++ P+D+A+F G
Sbjct: 65 YRAFFAGSFGSLMLLGIGPIVTASIVLQLLVGAEIIKLNLRDPRDQAIFQG 115
>UniRef50_Q8U019 Cluster: Preprotein translocase subunit secY; n=4;
Thermococcaceae|Rep: Preprotein translocase subunit secY
- Pyrococcus furiosus
Length = 468
Score = 90.2 bits (214), Expect = 6e-17
Identities = 39/97 (40%), Positives = 67/97 (69%), Gaps = 1/97 (1%)
Frame = +1
Query: 208 PEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVILASNRGTL 387
PE+ +P+R++ RE+ +WT + L ++ V +IP++GI D F ++RV+LA G++
Sbjct: 15 PEVERPKRRVPLRERFMWTGVALILYYVLAEIPVYGIPERIQ-DYFQFLRVVLAGRNGSI 73
Query: 388 MELGISPIVTSGLIMQLLAGAKIIEVG-DTPKDRALF 495
+ LGI PIVT+G+I+QLL G++II++ P+DR +
Sbjct: 74 LTLGIGPIVTAGIILQLLVGSEIIKLDLANPEDRRFY 110
>UniRef50_A2BME2 Cluster: Preprotein translocase subunit secY; n=1;
Hyperthermus butylicus DSM 5456|Rep: Preprotein
translocase subunit secY - Hyperthermus butylicus
(strain DSM 5456 / JCM 9403)
Length = 464
Score = 89.8 bits (213), Expect = 8e-17
Identities = 44/116 (37%), Positives = 71/116 (61%), Gaps = 1/116 (0%)
Frame = +1
Query: 160 MGIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 339
MG+ LEV+ +P AKP R+ +++WT + + ++L+ +IPL G+ A
Sbjct: 1 MGV--LEVLAEVSRYIPAAAKPARRPTLPTRLMWTGLVVLLYLIMSEIPLVGVYGYGQAT 58
Query: 340 PFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDT-PKDRALFNGA 504
+ ++L N GTLM LGI PIVT+G+++++L G K+IE+ T P+DR +F GA
Sbjct: 59 QATLMSMLLGMNIGTLMTLGIGPIVTAGIVLEVLVGGKLIELDLTKPRDRKIFMGA 114
>UniRef50_Q9UX84 Cluster: Preprotein translocase subunit secY; n=4;
Sulfolobaceae|Rep: Preprotein translocase subunit secY -
Sulfolobus solfataricus
Length = 469
Score = 89.8 bits (213), Expect = 8e-17
Identities = 42/114 (36%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Frame = +1
Query: 166 IKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPF 345
+ F++ + LP + KP+ K +K++W+ + + I+L+ PL+GI S+
Sbjct: 1 MSFIDSLATLGQYLPAVTKPKEKPSLGQKLVWSLVAVIIYLIMASTPLYGITSASFFKNL 60
Query: 346 YWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVG-DTPKDRALFNGA 504
++I AS GTL +LGI PI+T+GLIMQ+LAG+K+I + + P DR F A
Sbjct: 61 ILEQIIFASTTGTLAQLGIGPIITAGLIMQILAGSKLISIDLNDPDDRVKFTEA 114
>UniRef50_A3H5A9 Cluster: Preprotein translocase secY subunit; n=1;
Caldivirga maquilingensis IC-167|Rep: Preprotein
translocase secY subunit - Caldivirga maquilingensis
IC-167
Length = 482
Score = 88.6 bits (210), Expect = 2e-16
Identities = 38/111 (34%), Positives = 75/111 (67%), Gaps = 2/111 (1%)
Frame = +1
Query: 169 KFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFY 348
+F+E+++P +++P + +P R + +++WT + ++L+ PL+GI++S S+ F
Sbjct: 5 RFIEMVEPLLTLMPTVPRPNRPVTLGSRLIWTFLAATVYLLLSVTPLYGIVASSSSPLFN 64
Query: 349 -WIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVG-DTPKDRALF 495
+ +I AS GTL +LGI PI+ +G+IM+L+A +++++V + PKD+A F
Sbjct: 65 PLVAIIFASTNGTLAQLGIGPIIIAGIIMELVAFSELMDVDLNDPKDQARF 115
>UniRef50_O28377 Cluster: Preprotein translocase subunit secY; n=44;
Euryarchaeota|Rep: Preprotein translocase subunit secY -
Archaeoglobus fulgidus
Length = 493
Score = 87.8 bits (208), Expect = 3e-16
Identities = 41/108 (37%), Positives = 69/108 (63%), Gaps = 1/108 (0%)
Frame = +1
Query: 175 LEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWI 354
+ ++P+ +P + +P+ + FREK WTA L ++ + +P+FG+ S +S D F
Sbjct: 5 IRALQPYFERIPSVERPKGHVHFREKFGWTAAILLLYFILSNVPVFGL-SPESIDIFAAY 63
Query: 355 RVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDT-PKDRALF 495
R + A + G+++ LGI PIVT+ +I+QLL GA II++ T P+DRA +
Sbjct: 64 RALFAGSTGSIIALGIGPIVTASIILQLLVGAGIIKLDLTNPEDRAAY 111
>UniRef50_P28541 Cluster: Preprotein translocase subunit secY; n=10;
Euryarchaeota|Rep: Preprotein translocase subunit secY -
Methanococcus vannielii
Length = 438
Score = 86.2 bits (204), Expect = 1e-15
Identities = 40/107 (37%), Positives = 68/107 (63%), Gaps = 1/107 (0%)
Frame = +1
Query: 184 IKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVI 363
IKP ++PE+ +P + + F+EK+ WT + L ++ + I ++ + ++ F + + +
Sbjct: 3 IKPILELIPEVKRPLKGVSFKEKIQWTGLVLILYFILGTIDIY-MGGAEMPAMFAFWQTV 61
Query: 364 LASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVG-DTPKDRALFNG 501
AS GTL+ LGI PIVT+G+IMQLL G+++I + P +RALF G
Sbjct: 62 TASKMGTLITLGIGPIVTAGIIMQLLVGSELISLDLSKPMNRALFQG 108
>UniRef50_Q2FSG8 Cluster: Preprotein translocase secY subunit; n=4;
Methanomicrobiales|Rep: Preprotein translocase secY
subunit - Methanospirillum hungatei (strain JF-1 / DSM
864)
Length = 479
Score = 85.4 bits (202), Expect = 2e-15
Identities = 39/106 (36%), Positives = 67/106 (63%)
Frame = +1
Query: 169 KFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFY 348
+ L+ ++P + +P + PE + F+ K+ WTA L ++ IP+FG+ S +S D F
Sbjct: 3 EILDRMEPILAKMPAVKTPEGHVHFKNKLAWTAAILILYFALTNIPVFGL-SPESQDMFQ 61
Query: 349 WIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDR 486
+ R +LA + G+++ LGI PIVT+ +++QLL GA +I + DT + R
Sbjct: 62 YFRALLAGSSGSIVHLGIGPIVTASIVLQLLKGADLIHI-DTSEIR 106
>UniRef50_Q9YDD0 Cluster: Preprotein translocase subunit secY; n=1;
Aeropyrum pernix|Rep: Preprotein translocase subunit
secY - Aeropyrum pernix
Length = 457
Score = 85.0 bits (201), Expect = 2e-15
Identities = 46/116 (39%), Positives = 67/116 (57%), Gaps = 1/116 (0%)
Frame = +1
Query: 160 MGIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 339
MG+ ++V+ P + KPERK ++ WT + L ++ + IPL+GI +
Sbjct: 1 MGV--IDVLAAVGERFPAVRKPERKPTLYRRLAWTGVILVLYFIMSNIPLYGIPPQNIGG 58
Query: 340 PFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVG-DTPKDRALFNGA 504
R+I AS+ GTLMELGI PIVT+ LI+Q+L GAKII++ P+ R F A
Sbjct: 59 QVDLQRIIFASSAGTLMELGIGPIVTASLIIQVLVGAKIIKLDLADPEGRRKFTSA 114
>UniRef50_Q6L1A4 Cluster: Preprotein translocase secY subunit; n=5;
Thermoplasmatales|Rep: Preprotein translocase secY
subunit - Picrophilus torridus
Length = 587
Score = 83.8 bits (198), Expect = 5e-15
Identities = 39/100 (39%), Positives = 61/100 (61%), Gaps = 1/100 (1%)
Frame = +1
Query: 205 LPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVILASNRGT 384
LP I K + + F+ K++WT + + ++ I ++G+ D+ D F R I A G+
Sbjct: 75 LPAIKKAKGHVPFKYKLMWTGLIVILYFALTNIYIYGLNVKDTVDVFAAFRAIFAGASGS 134
Query: 385 LMELGISPIVTSGLIMQLLAGAKIIEVGDT-PKDRALFNG 501
LM+LGI PIVT+ ++MQL AGAKI + T P D+A++ G
Sbjct: 135 LMDLGIGPIVTASIVMQLFAGAKIFNLDLTNPDDKAIYQG 174
>UniRef50_P38353 Cluster: Sec sixty-one protein homolog; n=7;
Saccharomycetales|Rep: Sec sixty-one protein homolog -
Saccharomyces cerevisiae (Baker's yeast)
Length = 490
Score = 83.8 bits (198), Expect = 5e-15
Identities = 43/115 (37%), Positives = 68/115 (59%), Gaps = 4/115 (3%)
Frame = +1
Query: 163 GIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSA-- 336
G + ++++KP ILPE+ P K+ F +K+++T I+L Q PL G+ + +
Sbjct: 3 GFRLIDIVKPILPILPEVELPFEKLPFDDKIVYTIFAGLIYLFA-QFPLVGLPKATTPNV 61
Query: 337 -DPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVG-DTPKDRALF 495
DP Y++R + TL+E G+ P ++SGLI+QLLAG K+I+V DR LF
Sbjct: 62 NDPIYFLRGVFGCEPRTLLEFGLFPNISSGLILQLLAGLKVIKVNFKIQSDRELF 116
>UniRef50_A3GFV9 Cluster: Protein involved in co-translational
pathway of protein transport; n=6;
Saccharomycetales|Rep: Protein involved in
co-translational pathway of protein transport - Pichia
stipitis (Yeast)
Length = 501
Score = 79.8 bits (188), Expect = 8e-14
Identities = 42/115 (36%), Positives = 67/115 (58%), Gaps = 4/115 (3%)
Frame = +1
Query: 163 GIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDS--- 333
G + L+++K F +LPE+ P I F E++++T + I+LV QIP++G++ +
Sbjct: 3 GFRLLDLVKFFLPVLPEVEWPVEAISFDERIVFTVGSGIIYLVG-QIPIYGLVPNAQFKI 61
Query: 334 ADPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVG-DTPKDRALF 495
DPF+ R + A +GTL ELG+ P+VT+ QL G K++ V DR LF
Sbjct: 62 EDPFFSFRSVFAMEKGTLFELGVLPVVTAAFFWQLAVGLKLVNVNLGLRSDRELF 116
>UniRef50_Q2QAQ7 Cluster: Preprotein translocase subunit SecY; n=2;
environmental samples|Rep: Preprotein translocase
subunit SecY - uncultured marine group II euryarchaeote
HF70_59C08
Length = 604
Score = 77.8 bits (183), Expect = 3e-13
Identities = 42/108 (38%), Positives = 62/108 (57%), Gaps = 2/108 (1%)
Frame = +1
Query: 184 IKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVI 363
+K + P I KPE ++F K+ T L I+ + ++G+ S + D F R I
Sbjct: 96 LKRLVDVYPSITKPEGHVRFNSKLWTTTFVLIIYFAMTNVMIWGL-SEATIDVFSSFRAI 154
Query: 364 LASNRGTLMELGISPIVTSGLIMQLLAGAKII--EVGDTPKDRALFNG 501
+A G++M LGI PIVT +IMQL AGAKII ++GD+ D+ L+ G
Sbjct: 155 MAGASGSIMHLGIGPIVTGSIIMQLFAGAKIIKLDLGDS-DDKQLYQG 201
>UniRef50_O42965 Cluster: Uncharacterized protein C19G7.17; n=1;
Schizosaccharomyces pombe|Rep: Uncharacterized protein
C19G7.17 - Schizosaccharomyces pombe (Fission yeast)
Length = 475
Score = 76.2 bits (179), Expect = 1e-12
Identities = 40/115 (34%), Positives = 64/115 (55%), Gaps = 1/115 (0%)
Frame = +1
Query: 163 GIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADP 342
G +F+ IKP S+LPE+ P+ ++ EK+ W A + ++ + IP++G +D+ DP
Sbjct: 3 GARFINFIKPLSSLLPEVEGPKTHLELVEKLGWMAGCVVVYQILSIIPVYGAEKTDTLDP 62
Query: 343 FYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVG-DTPKDRALFNGA 504
RV+ S+ LM G++PI S ++Q+LA K I V + DR LF A
Sbjct: 63 INNFRVLDGSSASGLMITGLAPIYLSSFLLQILASKKKIAVNFNLIIDRVLFQNA 117
>UniRef50_Q6C854 Cluster: Similar to sp|P78979 Yarrowia lipolytica
transport protein SEC61 alpha subunit; n=1; Yarrowia
lipolytica|Rep: Similar to sp|P78979 Yarrowia lipolytica
transport protein SEC61 alpha subunit - Yarrowia
lipolytica (Candida lipolytica)
Length = 485
Score = 73.3 bits (172), Expect = 7e-12
Identities = 38/89 (42%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
Frame = +1
Query: 232 KIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVILASNRGTLMELGISPI 411
++ F +K+ +T F + IPL+G +S S DP+ + R I AS+ GTLMELG+ P+
Sbjct: 35 QLPFYDKIAYTVGIAITFFIMAGIPLYGAHASTS-DPYSFTRAISASSHGTLMELGVGPM 93
Query: 412 VTSGLIMQLLAGAKIIEVG-DTPKDRALF 495
VTSG+I Q+L G + + V D DR LF
Sbjct: 94 VTSGIIFQILGGFQALNVNFDIRADRELF 122
>UniRef50_Q0J0G0 Cluster: Os09g0512000 protein; n=2; Oryza sativa
(japonica cultivar-group)|Rep: Os09g0512000 protein -
Oryza sativa subsp. japonica (Rice)
Length = 466
Score = 68.1 bits (159), Expect = 3e-10
Identities = 37/106 (34%), Positives = 61/106 (57%), Gaps = 4/106 (3%)
Frame = +1
Query: 199 SILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSD---SADPFYWIRVILA 369
+++PE+ P++ I R+K +TAI LFIF+ Q+ L+GI DP +W+ +ILA
Sbjct: 12 ALVPEVQCPDQPISPRQKFKYTAIVLFIFVTASQVLLYGIQHQPRTIEPDPLHWLHLILA 71
Query: 370 SNRGTLMELGISPIVTSGLIMQLLAGAKIIEVG-DTPKDRALFNGA 504
S+R TL+ GI I+ +++++ KII + P+ L N A
Sbjct: 72 SSRSTLLSHGIVAILVPEVLVKIWVYLKIITLDTSAPETGVLMNRA 117
>UniRef50_A2ZMY6 Cluster: Putative uncharacterized protein; n=3;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 384
Score = 65.3 bits (152), Expect = 2e-09
Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Frame = +1
Query: 235 IQFREKVLWTAITLFIFLVCCQIPLFGIMS---SDSADPFYWIRVILASNRGTLMELGIS 405
+ FR KVL+TA++L +FLV ++ L+G+ + DP YW+ + AS R T+M LG+
Sbjct: 33 VSFRRKVLYTAVSLLVFLVAGELLLYGVQNYYGGGEHDPRYWMNAMSASLRPTVMALGLV 92
Query: 406 PIVTSGLIMQLLAGAKIIEVGD 471
P++ S +++ L KII V D
Sbjct: 93 PLLYSEMVVHLCMALKIIGVHD 114
>UniRef50_Q2QM98 Cluster: Preprotein translocase, SecY subunit
containing protein; n=3; Oryza sativa|Rep: Preprotein
translocase, SecY subunit containing protein - Oryza
sativa subsp. japonica (Rice)
Length = 461
Score = 64.5 bits (150), Expect = 3e-09
Identities = 33/96 (34%), Positives = 56/96 (58%), Gaps = 2/96 (2%)
Frame = +1
Query: 163 GIKFLEVIKPFCSILPEIAKP-ERKIQFREKVLWTAI-TLFIFLVCCQIPLFGIMSSDSA 336
G +++P + P + + E + FR +V TA +L + L +PL+
Sbjct: 13 GTALWRLLRPLAVLGPRMQRRREAAVPFRGQVRNTAAASLLLLLSLSHVPLYAGAGDADP 72
Query: 337 DPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLA 444
DP +W R +LA+ RGT+MELG++P+VTS ++++LLA
Sbjct: 73 DPLFWARPLLAAPRGTVMELGVAPVVTSWVVVRLLA 108
>UniRef50_A2ZMZ3 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 546
Score = 62.5 bits (145), Expect = 1e-08
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 4/74 (5%)
Frame = +1
Query: 235 IQFREKVLWTAITLFIFLVCCQIPLFGIMS----SDSADPFYWIRVILASNRGTLMELGI 402
+ FR K +TA +L +FLV Q+PL+G+ D DP YW+ + AS+ TLM LGI
Sbjct: 15 VSFRRKAAYTAASLLVFLVAGQLPLYGVKKYNGDKDVPDPLYWMNCMFASSNNTLMTLGI 74
Query: 403 SPIVTSGLIMQLLA 444
P++ S + +++ +
Sbjct: 75 IPLLLSEMAVRIFS 88
>UniRef50_Q8ZT51 Cluster: Preprotein translocase secY subunit; n=4;
Pyrobaculum|Rep: Preprotein translocase secY subunit -
Pyrobaculum aerophilum
Length = 459
Score = 60.1 bits (139), Expect = 7e-08
Identities = 27/105 (25%), Positives = 60/105 (57%), Gaps = 4/105 (3%)
Frame = +1
Query: 193 FCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIM--SSDSADPF-YWIRVI 363
F +++P +++P R++ +++ WTA+ ++++ PL+G+ + P + +I
Sbjct: 4 FLTLIPTVSRPPRRLPLSKRLFWTAVVAIVYIMMTITPLYGVQHTTQQGTQPLQQLLSII 63
Query: 364 LASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVG-DTPKDRALF 495
+ GTL LGI PIV +G+++++ A + I+ + + +DR F
Sbjct: 64 FGTAYGTLAHLGIGPIVIAGILLEVFAFSGILNLDLNKREDRLKF 108
>UniRef50_Q8SQQ4 Cluster: ER PROTEIN-TRANSLOCATION COMPLEX; n=2;
Apansporoblastina|Rep: ER PROTEIN-TRANSLOCATION COMPLEX
- Encephalitozoon cuniculi
Length = 410
Score = 52.4 bits (120), Expect = 1e-05
Identities = 26/50 (52%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Frame = +1
Query: 352 IRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVG-DTPKDRALFN 498
+R ++ASNRGTLM+LG SP+VTS LIMQ L ++I++V +D+ L N
Sbjct: 1 MRAMMASNRGTLMDLGTSPVVTSSLIMQFLTMSEILKVDWSIKEDKNLHN 50
>UniRef50_Q74NB9 Cluster: NEQ168; n=1; Nanoarchaeum equitans|Rep:
NEQ168 - Nanoarchaeum equitans
Length = 476
Score = 51.2 bits (117), Expect = 3e-05
Identities = 27/101 (26%), Positives = 55/101 (54%)
Frame = +1
Query: 181 VIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRV 360
+++ LP I KP+ +++ W+AI + ++L+ PL G+ S A F + V
Sbjct: 4 IVEKVVQKLPTIKKPKYLTNL-DRLKWSAIAVILYLLLSYTPLIGV-SQTGAGVFEELVV 61
Query: 361 ILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKD 483
+L ++ G+++ LGI PI+ L+ +L G+ + + T ++
Sbjct: 62 LLGASFGSIVSLGIGPIIIGYLLAELFIGSGELNIDITTEE 102
>UniRef50_O13579 Cluster: Putative uncharacterized protein YLR379W;
n=1; Saccharomyces cerevisiae|Rep: Putative
uncharacterized protein YLR379W - Saccharomyces
cerevisiae (Baker's yeast)
Length = 124
Score = 51.2 bits (117), Expect = 3e-05
Identities = 31/79 (39%), Positives = 40/79 (50%)
Frame = -1
Query: 410 IGEIPSSINVPLFDARITRIQ*KGSALSDDIIPNKGIWQHTKKINNVIAVHNTFSRN*IL 231
+GE P+S VP +A + R Q +GS +S D IP GIW KKI+ V +F
Sbjct: 2 MGETPNSSKVPRLEASMARSQYRGSEVSLDTIPYSGIWPRIKKISRETPVQISFWLYGTF 61
Query: 230 RSGFAISGNILQNGLITSK 174
SG SG NGL S+
Sbjct: 62 LSGAITSGRKDSNGLNKSR 80
>UniRef50_Q839E4 Cluster: Preprotein translocase, SecY subunit;
n=13; Lactobacillales|Rep: Preprotein translocase, SecY
subunit - Enterococcus faecalis (Streptococcus faecalis)
Length = 432
Score = 35.9 bits (79), Expect = 1.4
Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 7/73 (9%)
Frame = +1
Query: 244 REKVLWTAITLFIFLVCCQIPLFGIMSSDSAD----PFY-WIRVILAS--NRGTLMELGI 402
R K+L+T + LF+F + I + G+ + +D PF + ++ S ++ +G+
Sbjct: 15 RSKILFTVLILFVFRLGAHITVPGVNAKGLSDLSSLPFLNMLNMVSGSAMQNFSIFSMGV 74
Query: 403 SPIVTSGLIMQLL 441
SP +T+ +I+QLL
Sbjct: 75 SPYITASIIIQLL 87
>UniRef50_A1RJU5 Cluster: Putative uncharacterized protein; n=7;
Shewanella|Rep: Putative uncharacterized protein -
Shewanella sp. (strain W3-18-1)
Length = 1305
Score = 35.9 bits (79), Expect = 1.4
Identities = 28/117 (23%), Positives = 56/117 (47%), Gaps = 8/117 (6%)
Frame = -1
Query: 461 SMILAPASNCMMSPDVTIG------EIPSSINVPLFDARITRIQ*KGSALSDDIIPNKGI 300
++I P + +SPD+T+ E+ ++NVP + +I ++ G ALS+D++ N I
Sbjct: 994 AVIQPPLAILDISPDLTLSFSSEQLEVKGTVNVPSGNIKIVQLAEGGVALSEDVVFNDSI 1053
Query: 299 WQHTKKIN--NVIAVHNTFSRN*ILRSGFAISGNILQNGLITSKNFIPILIYCDLTI 135
K + ++A N N + G + G + + + F P L++ D+ +
Sbjct: 1054 AAAQPKSSPYAIVADLNINVGNDLRVDGMGLKGKLQGTLKLQQQAFRPPLLFGDIKV 1110
>UniRef50_Q084M0 Cluster: Putative uncharacterized protein; n=1;
Shewanella frigidimarina NCIMB 400|Rep: Putative
uncharacterized protein - Shewanella frigidimarina
(strain NCIMB 400)
Length = 1304
Score = 35.5 bits (78), Expect = 1.8
Identities = 25/115 (21%), Positives = 54/115 (46%), Gaps = 2/115 (1%)
Frame = -1
Query: 473 VSPTSMILAPASNCMMSPDVTIGEIPSSINVPLFDARITRIQ*KGSALSDDIIPNKGIWQ 294
+ P IL + + M+ D + I ++VP +IT++ G A+S+D++ N + +
Sbjct: 995 IQPPMAILNVSPDINMTFDEQLFAIKGKVDVPSGQIKITQLAEGGVAVSNDVVFNDSVSE 1054
Query: 293 HTKKIN--NVIAVHNTFSRN*ILRSGFAISGNILQNGLITSKNFIPILIYCDLTI 135
T K + V A N + G + G + + ++ + F P +++ D+ +
Sbjct: 1055 QTVKTSPYAVTADLNISVGKRLTIDGMGLKGRLEGDLILKQQAFKPPMLFGDIKV 1109
>UniRef50_Q18CH6 Cluster: Preprotein translocase SecY subunit
precursor; n=1; Clostridium difficile 630|Rep:
Preprotein translocase SecY subunit precursor -
Clostridium difficile (strain 630)
Length = 422
Score = 33.9 bits (74), Expect = 5.5
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 8/74 (10%)
Frame = +1
Query: 244 REKVLWTAITLFIFLVCCQIPLFGIMSS--------DSADPFYWIRVILASNRGTLMELG 399
R+KV++T + + IF + IP+ GI +S +S Y + A + +L LG
Sbjct: 15 RKKVMYTLMMIVIFRIGTTIPVPGIDTSIIQKMVGGNSLLSLYNMFTGGAFSNFSLFALG 74
Query: 400 ISPIVTSGLIMQLL 441
ISP +T+ +I+QLL
Sbjct: 75 ISPYITASIIIQLL 88
>UniRef50_A1S616 Cluster: Putative uncharacterized protein; n=1;
Shewanella amazonensis SB2B|Rep: Putative uncharacterized
protein - Shewanella amazonensis (strain ATCC BAA-1098 /
SB2B)
Length = 1297
Score = 33.9 bits (74), Expect = 5.5
Identities = 27/119 (22%), Positives = 59/119 (49%), Gaps = 8/119 (6%)
Frame = -1
Query: 461 SMILAPASNCMMSPDVTIG------EIPSSINVPLFDARITRIQ*KGSALSDDIIPNKGI 300
++I+ P + +SPDVT+ ++ S+N+P + +I ++ G A+S D++ + I
Sbjct: 987 AVIVPPMALLDVSPDVTLTFDAAMLDLKGSVNIPTGNIKIVQLAEGGVAVSPDVVFDDSI 1046
Query: 299 WQHTKKIN--NVIAVHNTFSRN*ILRSGFAISGNILQNGLITSKNFIPILIYCDLTILT 129
+ +K + V A N + + G + G + + + F P L++ D+ +L+
Sbjct: 1047 AEAEQKTSPYGVTADLNIRVGDQVKIEGMGLKGRLDGTLRLQQQAFKPPLLFGDVKVLS 1105
>UniRef50_Q6KI36 Cluster: Preprotein translocase secY subunit; n=1;
Mycoplasma mobile|Rep: Preprotein translocase secY
subunit - Mycoplasma mobile
Length = 472
Score = 33.5 bits (73), Expect = 7.3
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Frame = +1
Query: 229 RKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVI-LASNRG----TLME 393
+K K+++T L IF + I L G+ S + D ++ ++ L G +++
Sbjct: 32 KKRALLNKIVFTIFLLSIFAIAGSITLPGV-SVGNLDSNTFLGILNLVGGGGLRNFSIVA 90
Query: 394 LGISPIVTSGLIMQLL 441
LGISP +T+ L+MQ+L
Sbjct: 91 LGISPFITASLVMQIL 106
>UniRef50_UPI00006CDD72 Cluster: hypothetical protein
TTHERM_00294600; n=1; Tetrahymena thermophila SB210|Rep:
hypothetical protein TTHERM_00294600 - Tetrahymena
thermophila SB210
Length = 1219
Score = 33.1 bits (72), Expect = 9.6
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +2
Query: 194 SAVYCQK*RNQNVRFNSERKYYGQ 265
S Y +K NQNV FNS+R+Y GQ
Sbjct: 566 SQKYTKKKENQNVNFNSQRRYQGQ 589
>UniRef50_Q4Q5C4 Cluster: Putative uncharacterized protein; n=2;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major
Length = 731
Score = 33.1 bits (72), Expect = 9.6
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = -1
Query: 515 LLVDAPLNKALSFGVSPTSMILAPASNCMMSPDVTIGEIPS 393
++++ PLN + V PTS+ P SN + SP + + E+PS
Sbjct: 235 VVLEEPLNTSAP-PVQPTSVAKTPLSNIVSSPTIVVREVPS 274
>UniRef50_P38375 Cluster: Preprotein translocase subunit secY; n=18;
Firmicutes|Rep: Preprotein translocase subunit secY -
Bacillus halodurans
Length = 430
Score = 33.1 bits (72), Expect = 9.6
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Frame = +1
Query: 244 REKVLWTAITLFIFLVCCQIPLFGIMSS-----DSADPFYWIRVILASNRG--TLMELGI 402
R KV++T + L +F + IP+ G D A+ F ++ G ++ +GI
Sbjct: 15 RRKVIFTLLMLIVFRIGSFIPVPGTNREVLDFVDQANAFGFLNTFGGGALGNFSIFAMGI 74
Query: 403 SPIVTSGLIMQLL 441
P +T+ ++MQLL
Sbjct: 75 MPYITASIVMQLL 87
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 498,568,096
Number of Sequences: 1657284
Number of extensions: 9160873
Number of successful extensions: 22732
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 22201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22708
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 79112361923
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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