Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_M19
(881 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0577 - 10862976-10863215,10863653-10863788,10863906-108640... 161 5e-40
09_02_0576 - 10853361-10853600,10854033-10854168,10854285-108544... 161 5e-40
03_02_0140 + 5864612-5864955,5865154-5865381,5865460-5865814,586... 161 5e-40
03_05_0759 - 27500941-27501568,27503540-27504154,27504228-27504598 124 1e-28
09_04_0704 + 19623046-19623386,19623583-19623792,19623872-196242... 68 9e-12
12_02_1184 + 26785739-26786113 65 6e-11
12_02_1087 - 25949878-25950369,25950386-25950944,25950988-25951388 64 1e-10
12_02_1195 + 26906814-26907121,26907771-26907992,26908913-269091... 62 4e-10
12_02_1183 - 26764883-26765174,26765559-26765677 62 4e-10
02_01_0240 - 1593186-1593323,1593380-1593406 29 4.9
>09_02_0577 -
10862976-10863215,10863653-10863788,10863906-10864030,
10864132-10864516,10864571-10864798,10864976-10865319
Length = 485
Score = 161 bits (392), Expect = 5e-40
Identities = 74/115 (64%), Positives = 96/115 (83%), Gaps = 1/115 (0%)
Frame = +1
Query: 163 GIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADP 342
G + L +++PF + LPE+ +RKI FREKV++T I+LFIFLVC Q+PL+GI S+ ADP
Sbjct: 4 GFRVLHLVRPFLAFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADP 63
Query: 343 FYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPK-DRALFNGA 504
FYW+RVILASNRGT+MELGI+PIVTSG++MQLL G+KIIEV ++ + DRAL NGA
Sbjct: 64 FYWMRVILASNRGTVMELGITPIVTSGMVMQLLVGSKIIEVDNSVREDRALLNGA 118
>09_02_0576 -
10853361-10853600,10854033-10854168,10854285-10854409,
10854487-10854871,10854934-10855161,10855332-10855675
Length = 485
Score = 161 bits (392), Expect = 5e-40
Identities = 74/115 (64%), Positives = 96/115 (83%), Gaps = 1/115 (0%)
Frame = +1
Query: 163 GIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADP 342
G + L +++PF + LPE+ +RKI FREKV++T I+LFIFLVC Q+PL+GI S+ ADP
Sbjct: 4 GFRVLHLVRPFLAFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADP 63
Query: 343 FYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPK-DRALFNGA 504
FYW+RVILASNRGT+MELGI+PIVTSG++MQLL G+KIIEV ++ + DRAL NGA
Sbjct: 64 FYWMRVILASNRGTVMELGITPIVTSGMVMQLLVGSKIIEVDNSVREDRALLNGA 118
>03_02_0140 +
5864612-5864955,5865154-5865381,5865460-5865814,
5865899-5866023,5866150-5866285,5866382-5866621
Length = 475
Score = 161 bits (392), Expect = 5e-40
Identities = 74/115 (64%), Positives = 96/115 (83%), Gaps = 1/115 (0%)
Frame = +1
Query: 163 GIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADP 342
G + L +++PF + LPE+ +RKI FREKV++T I+LFIFLVC Q+PL+GI S+ ADP
Sbjct: 4 GFRVLHLVRPFLAFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADP 63
Query: 343 FYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPK-DRALFNGA 504
FYW+RVILASNRGT+MELGI+PIVTSG++MQLL G+KIIEV ++ + DRAL NGA
Sbjct: 64 FYWMRVILASNRGTVMELGITPIVTSGMVMQLLVGSKIIEVDNSVREDRALLNGA 118
>03_05_0759 - 27500941-27501568,27503540-27504154,27504228-27504598
Length = 537
Score = 124 bits (298), Expect = 1e-28
Identities = 56/118 (47%), Positives = 83/118 (70%), Gaps = 6/118 (5%)
Frame = +1
Query: 169 KFLEVIKPFCSILPEIAKPE-RKIQFREKVLWTAITLFIFLVCCQIPLFGI----MSSDS 333
+ L++++PF +LPE+ +P+ R++ FR K+ TA LF FL C Q+PL+G+ +
Sbjct: 10 RLLDLVRPFMPLLPEVREPDGRRVPFRRKLACTAAALFAFLACSQLPLYGLHRAAAAGGG 69
Query: 334 ADPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEV-GDTPKDRALFNGA 504
ADPFYW+R ILASNRGT+MELGI+P+VT+G ++QLL G+ ++ P DRAL + A
Sbjct: 70 ADPFYWVRAILASNRGTVMELGITPVVTAGTLVQLLVGSNLVRADSSNPDDRALLSAA 127
>09_04_0704 +
19623046-19623386,19623583-19623792,19623872-19624223,
19624320-19624444,19624578-19624668,19624817-19625050
Length = 450
Score = 68.1 bits (159), Expect = 9e-12
Identities = 37/106 (34%), Positives = 61/106 (57%), Gaps = 4/106 (3%)
Frame = +1
Query: 199 SILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSD---SADPFYWIRVILA 369
+++PE+ P++ I R+K +TAI LFIF+ Q+ L+GI DP +W+ +ILA
Sbjct: 12 ALVPEVQCPDQPISPRQKFKYTAIVLFIFVTASQVLLYGIQHQPRTIEPDPLHWLHLILA 71
Query: 370 SNRGTLMELGISPIVTSGLIMQLLAGAKIIEVG-DTPKDRALFNGA 504
S+R TL+ GI I+ +++++ KII + P+ L N A
Sbjct: 72 SSRSTLLSHGIVAILVPEVLVKIWVYLKIITLDTSAPETGVLMNRA 117
>12_02_1184 + 26785739-26786113
Length = 124
Score = 65.3 bits (152), Expect = 6e-11
Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Frame = +1
Query: 235 IQFREKVLWTAITLFIFLVCCQIPLFGIMS---SDSADPFYWIRVILASNRGTLMELGIS 405
+ FR KVL+TA++L +FLV ++ L+G+ + DP YW+ + AS R T+M LG+
Sbjct: 33 VSFRRKVLYTAVSLLVFLVAGELLLYGVQNYYGGGEHDPRYWMNAMSASLRPTVMALGLV 92
Query: 406 PIVTSGLIMQLLAGAKIIEVGD 471
P++ S +++ L KII V D
Sbjct: 93 PLLYSEMVVHLCMALKIIGVHD 114
>12_02_1087 - 25949878-25950369,25950386-25950944,25950988-25951388
Length = 483
Score = 64.5 bits (150), Expect = 1e-10
Identities = 33/96 (34%), Positives = 56/96 (58%), Gaps = 2/96 (2%)
Frame = +1
Query: 163 GIKFLEVIKPFCSILPEIAKP-ERKIQFREKVLWTAI-TLFIFLVCCQIPLFGIMSSDSA 336
G +++P + P + + E + FR +V TA +L + L +PL+
Sbjct: 13 GTALWRLLRPLAVLGPRMQRRREAAVPFRGQVRNTAAASLLLLLSLSHVPLYAGAGDADP 72
Query: 337 DPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLA 444
DP +W R +LA+ RGT+MELG++P+VTS ++++LLA
Sbjct: 73 DPLFWARPLLAAPRGTVMELGVAPVVTSWVVVRLLA 108
>12_02_1195 +
26906814-26907121,26907771-26907992,26908913-26909153,
26909512-26909642,26910336-26910474,26910600-26910810,
26911371-26911759
Length = 546
Score = 62.5 bits (145), Expect = 4e-10
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 4/74 (5%)
Frame = +1
Query: 235 IQFREKVLWTAITLFIFLVCCQIPLFGIMS----SDSADPFYWIRVILASNRGTLMELGI 402
+ FR K +TA +L +FLV Q+PL+G+ D DP YW+ + AS+ TLM LGI
Sbjct: 15 VSFRRKAAYTAASLLVFLVAGQLPLYGVKKYNGDKDVPDPLYWMNCMFASSNNTLMTLGI 74
Query: 403 SPIVTSGLIMQLLA 444
P++ S + +++ +
Sbjct: 75 IPLLLSEMAVRIFS 88
>12_02_1183 - 26764883-26765174,26765559-26765677
Length = 136
Score = 62.5 bits (145), Expect = 4e-10
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 4/74 (5%)
Frame = +1
Query: 235 IQFREKVLWTAITLFIFLVCCQIPLFGIMS----SDSADPFYWIRVILASNRGTLMELGI 402
+ FR K +TA +L +FLV Q+PL+G+ D DP YW+ + AS+ TLM LGI
Sbjct: 48 VSFRRKAAYTAASLLVFLVAGQLPLYGVKKYNGDKDVPDPLYWMNCMFASSNNTLMTLGI 107
Query: 403 SPIVTSGLIMQLLA 444
P++ S + +++ +
Sbjct: 108 IPLLLSEMAVRIFS 121
>02_01_0240 - 1593186-1593323,1593380-1593406
Length = 54
Score = 29.1 bits (62), Expect = 4.9
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +3
Query: 291 MLPDSLIWYNVIRQCRSLLLDPCNSCIK*RDI 386
++ D L+W + R C+S ++P C R I
Sbjct: 15 LISDGLLWLAIARCCKSTCMEPIQGCFLSRQI 46
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,706,214
Number of Sequences: 37544
Number of extensions: 225935
Number of successful extensions: 542
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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