Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_M19
         (881 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC026179-1|AAH26179.1|  418|Homo sapiens SEC61A2 protein protein.     235   2e-61
AF346603-1|AAK29084.1|  476|Homo sapiens Sec61 alpha form 2 prot...   235   2e-61
AK022640-1|BAB14148.1|  437|Homo sapiens protein ( Homo sapiens ...   232   1e-60
AF346602-1|AAK29083.1|  476|Homo sapiens Sec61 alpha form 1 prot...   231   3e-60
AF084458-1|AAD39847.1|  476|Homo sapiens sec61 homolog protein.       231   3e-60

>BC026179-1|AAH26179.1|  418|Homo sapiens SEC61A2 protein protein.
          Length = 418

 Score =  235 bits (575), Expect = 2e-61
 Identities = 111/115 (96%), Positives = 114/115 (99%)
 Frame = +1

Query: 160 MGIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 339
           MGIKFLEVIKPFC++LPEI KPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD
Sbjct: 1   MGIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 60

Query: 340 PFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGA 504
           PFYW+RVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGA
Sbjct: 61  PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGA 115


>AF346603-1|AAK29084.1|  476|Homo sapiens Sec61 alpha form 2
           protein.
          Length = 476

 Score =  235 bits (575), Expect = 2e-61
 Identities = 111/115 (96%), Positives = 114/115 (99%)
 Frame = +1

Query: 160 MGIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 339
           MGIKFLEVIKPFC++LPEI KPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD
Sbjct: 1   MGIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 60

Query: 340 PFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGA 504
           PFYW+RVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGA
Sbjct: 61  PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGA 115


>AK022640-1|BAB14148.1|  437|Homo sapiens protein ( Homo sapiens
           cDNA FLJ12578 fis, clone NT2RM4001054, moderately
           similar to Homo sapiens sec61 homolog mRNA. ).
          Length = 437

 Score =  232 bits (568), Expect = 1e-60
 Identities = 110/115 (95%), Positives = 113/115 (98%)
 Frame = +1

Query: 160 MGIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 339
           MGIKFLEVIKPFC++ PEI KPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD
Sbjct: 1   MGIKFLEVIKPFCAVPPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 60

Query: 340 PFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGA 504
           PFYW+RVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGA
Sbjct: 61  PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGA 115


>AF346602-1|AAK29083.1|  476|Homo sapiens Sec61 alpha form 1
           protein.
          Length = 476

 Score =  231 bits (564), Expect = 3e-60
 Identities = 110/115 (95%), Positives = 112/115 (97%)
 Frame = +1

Query: 160 MGIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 339
           M IKFLEVIKPFC ILPEI KPERKIQF+EKVLWTAITLFIFLVCCQIPLFGIMSSDSAD
Sbjct: 1   MAIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 60

Query: 340 PFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGA 504
           PFYW+RVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGA
Sbjct: 61  PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGA 115


>AF084458-1|AAD39847.1|  476|Homo sapiens sec61 homolog protein.
          Length = 476

 Score =  231 bits (564), Expect = 3e-60
 Identities = 110/115 (95%), Positives = 112/115 (97%)
 Frame = +1

Query: 160 MGIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 339
           M IKFLEVIKPFC ILPEI KPERKIQF+EKVLWTAITLFIFLVCCQIPLFGIMSSDSAD
Sbjct: 1   MAIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 60

Query: 340 PFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGA 504
           PFYW+RVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGA
Sbjct: 61  PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGA 115


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,484,593
Number of Sequences: 237096
Number of extensions: 1314305
Number of successful extensions: 2277
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2277
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11270645666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)