Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_M19
         (881 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99281-10|CAB16516.1|  473|Caenorhabditis elegans Hypothetical p...   227   8e-60
AF025454-9|AAK68371.1|  331|Caenorhabditis elegans Serpentine re...    30   1.9  
AC024881-7|AAK71417.1|  310|Caenorhabditis elegans Serpentine re...    29   4.4  

>Z99281-10|CAB16516.1|  473|Caenorhabditis elegans Hypothetical
           protein Y57G11C.15 protein.
          Length = 473

 Score =  227 bits (555), Expect = 8e-60
 Identities = 103/115 (89%), Positives = 112/115 (97%)
 Frame = +1

Query: 160 MGIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 339
           MGIKFLE +KPFC  +PE++KPERKIQFREK+LWTAITLF+FLVCCQIPLFGIMS+DSAD
Sbjct: 1   MGIKFLEFVKPFCGFVPEVSKPERKIQFREKMLWTAITLFVFLVCCQIPLFGIMSTDSAD 60

Query: 340 PFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGA 504
           PFYW+RVI+ASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGA
Sbjct: 61  PFYWLRVIMASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGA 115


>AF025454-9|AAK68371.1|  331|Caenorhabditis elegans Serpentine
           receptor, class i protein61 protein.
          Length = 331

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 17/51 (33%), Positives = 22/51 (43%)
 Frame = +1

Query: 214 IAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVIL 366
           IAK  RK      V+W  +  FI  +C  + LF     D      +IRV L
Sbjct: 119 IAKTLRKYIMPRWVVWCVLGFFIVYICAVVGLFSQTRRDEMHQMEYIRVNL 169


>AC024881-7|AAK71417.1|  310|Caenorhabditis elegans Serpentine
           receptor, class sx protein3 protein.
          Length = 310

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +1

Query: 175 LEVIKPFCSI--LPEIAKPERKIQFREKVLWTAITLFIFLVCCQ 300
           L V   FC +  LP        IQ R  + + AI+L+IF +C Q
Sbjct: 52  LSVSHIFCLLFELPNAVLLFTGIQLRRNICFPAISLYIFFICAQ 95


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,634,788
Number of Sequences: 27780
Number of extensions: 223303
Number of successful extensions: 562
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)