Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_M18
         (930 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    27   0.28 
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    27   0.28 
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   5.9  

>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 26.6 bits (56), Expect = 0.28
 Identities = 13/38 (34%), Positives = 15/38 (39%)
 Frame = +1

Query: 373 GGPPXKKXGXARGDAXSXXGXGGGXGDTGAXGXDVRPP 486
           GG P +  G   GD  +           GA   DVRPP
Sbjct: 38  GGKPPELTGSTNGDGGARSNADSTSHTDGASTPDVRPP 75


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 26.6 bits (56), Expect = 0.28
 Identities = 13/38 (34%), Positives = 15/38 (39%)
 Frame = +1

Query: 373 GGPPXKKXGXARGDAXSXXGXGGGXGDTGAXGXDVRPP 486
           GG P +  G   GD  +           GA   DVRPP
Sbjct: 194 GGKPPELTGSTNGDGGARSNADSTSHTDGASTPDVRPP 231


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = -2

Query: 542 ME*XSGPPPPXPEXXDXAXGGRTSXPXAPV 453
           ME  + PPPP P     A   RT     P+
Sbjct: 726 MENNAPPPPPPPRVESFAETVRTVSKIPPL 755


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.314    0.147    0.511 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,140
Number of Sequences: 336
Number of extensions: 2234
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 26065116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)