Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_M18
(930 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.31
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 24 0.98
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 23 1.6
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 28 1.6
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 2.8
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 23 3.8
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 6.6
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 26 6.6
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 6.6
SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces pom... 26 6.6
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch... 26 8.7
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 30.7 bits (66), Expect = 0.31
Identities = 14/40 (35%), Positives = 17/40 (42%)
Frame = -2
Query: 521 PPPXPEXXDXAXGGRTSXPXAPVSPXPPPXPXXLXASPRA 402
PP P G + P P +P PPP P A+P A
Sbjct: 450 PPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAPVA 489
Score = 27.9 bits (59), Expect = 2.2
Identities = 36/155 (23%), Positives = 41/155 (26%), Gaps = 4/155 (2%)
Frame = +1
Query: 271 KGXXPXGXXKKXXGXXPPPXGXXAPPXXXXGGXGGGPPXKKXGXARGDAXSXXGXGGGX- 447
+G P G PPP PP G PP + S G
Sbjct: 322 RGKPPIGNGSSNSSLPPPPP----PPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPP 377
Query: 448 --GDTGAXGXDVRPPXAXSXHSXXXXXXPXNHSITXDXPGXXXGGXXPXXPPTPPPQXXX 621
+ A PP A S N S T P P PP+ PP
Sbjct: 378 PLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTP----PSLPPSAPPSLPP 433
Query: 622 HXPPPXGVHXXNXPPKXREGQ-XPPXLXRXPXXPP 723
PP + PP PP P PP
Sbjct: 434 SAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPP 468
Score = 26.6 bits (56), Expect = 5.0
Identities = 12/32 (37%), Positives = 13/32 (40%)
Frame = -2
Query: 530 SGPPPPXPEXXDXAXGGRTSXPXAPVSPXPPP 435
S PPP P A G P +P PPP
Sbjct: 334 SSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPP 365
Score = 26.6 bits (56), Expect = 5.0
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Frame = -2
Query: 530 SGPPP-PXPEXXDXAXGGRTSXPXAPVSPXPPPXPXXLXASP 408
S PP P G + P P +P PP P + A+P
Sbjct: 426 SAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAP 467
Score = 25.8 bits (54), Expect = 8.7
Identities = 14/40 (35%), Positives = 17/40 (42%)
Frame = -2
Query: 524 PPPPXPEXXDXAXGGRTSXPXAPVSPXPPPXPXXLXASPR 405
PPPP P + A G P S PPP P ++ R
Sbjct: 337 PPPPPPPRSNAA--GSIPLPPQGRSAPPPPPPRSAPSTGR 374
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/27 (37%), Positives = 10/27 (37%)
Frame = -1
Query: 486 GGPXVXPXRPRVPXXPPXPXXAXRIPP 406
G P P P P PP P PP
Sbjct: 442 GAPAAPPLPPSAPIAPPLPAGMPAAPP 468
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 23.8 bits (49), Expect(2) = 0.98
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = +2
Query: 794 PPPPPPXKPXXKT 832
PPPPPP P T
Sbjct: 239 PPPPPPTLPPQST 251
Score = 23.4 bits (48), Expect(2) = 0.98
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +2
Query: 788 PXPPPPPP 811
P PPPPPP
Sbjct: 236 PAPPPPPP 243
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 23.4 bits (48), Expect(2) = 1.6
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +2
Query: 788 PXPPPPPP 811
P PPPPPP
Sbjct: 905 PTPPPPPP 912
Score = 23.0 bits (47), Expect(2) = 1.6
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +2
Query: 794 PPPPPPXKP 820
PPPPPP P
Sbjct: 945 PPPPPPPPP 953
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 28.3 bits (60), Expect = 1.6
Identities = 16/49 (32%), Positives = 20/49 (40%)
Frame = -2
Query: 584 GXXPPLXXPGXSCVME*XSGPPPPXPEXXDXAXGGRTSXPXAPVSPXPP 438
G PP PG + +GPPPP P + GG AP + P
Sbjct: 760 GPPPPPPPPGVA-----GAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803
Score = 26.6 bits (56), Expect = 5.0
Identities = 15/42 (35%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Frame = -2
Query: 524 PPPPXPEXXDXAXGGRTSXPXAPVS---PXPPPXPXXLXASP 408
PPPP A P AP+ P PPP P A P
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGP 775
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.5 bits (58), Expect = 2.8
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +2
Query: 788 PXPPPPPPXKPXXKTPP 838
P PPPPP +P + PP
Sbjct: 10 PPPPPPPGFEPPSQPPP 26
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 23.4 bits (48), Expect(2) = 3.8
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +2
Query: 788 PXPPPPPP 811
P PPPPPP
Sbjct: 370 PPPPPPPP 377
Score = 21.8 bits (44), Expect(2) = 3.8
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = +2
Query: 794 PPPPPPXKPXXKTP 835
PPPPPP + +P
Sbjct: 371 PPPPPPPELLNHSP 384
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/34 (35%), Positives = 12/34 (35%)
Frame = -2
Query: 530 SGPPPPXPEXXDXAXGGRTSXPXAPVSPXPPPXP 429
S P PP P P P S PPP P
Sbjct: 1703 SAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 26.2 bits (55), Expect = 6.6
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = +1
Query: 796 PPPPPXKTXXKNPPPXXXFXXPPHG 870
PPPPP + P P PP G
Sbjct: 419 PPPPPISSSSTTPRPDDKPSLPPRG 443
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/39 (30%), Positives = 14/39 (35%)
Frame = -2
Query: 524 PPPPXPEXXDXAXGGRTSXPXAPVSPXPPPXPXXLXASP 408
PP P P + P PV PP P A+P
Sbjct: 1112 PPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAP 1150
>SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 383
Score = 26.2 bits (55), Expect = 6.6
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = +1
Query: 631 PPXGVHXXNXPPKXREGQXPPXLXR 705
P +H PPK ++ Q PP R
Sbjct: 5 PSYSIHTLRAPPKAKQNQIPPSTTR 29
>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 515
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = -2
Query: 479 RTSXPXAPVSPXPPPXPXXLXASPRAL 399
R P P S PPP P L SP L
Sbjct: 58 RHRYPETPPSLPPPPSPGILATSPAVL 84
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.147 0.511
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,856,674
Number of Sequences: 5004
Number of extensions: 26002
Number of successful extensions: 185
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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