Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_M16
         (920 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ...    64   4e-09
UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ...    60   6e-08
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    58   2e-07
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    56   2e-06
UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular organi...    55   2e-06
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h...    44   0.004
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru...    40   0.089
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    38   0.36 
UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1; ...    36   1.1  
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    36   1.5  
UniRef50_Q12GC2 Cluster: Putative uncharacterized protein precur...    34   5.9  

>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
           root|Rep: Putative uncharacterized protein - Escherichia
           coli
          Length = 61

 Score = 64.5 bits (150), Expect = 4e-09
 Identities = 30/38 (78%), Positives = 30/38 (78%)
 Frame = -2

Query: 613 PFAGLLLTCSFLRYPLILWITVLPPLSELIPLAAAERP 500
           P    LLTCSF  YPLILWITVLPPLSEL PLAA ERP
Sbjct: 19  PVLCFLLTCSFRLYPLILWITVLPPLSELTPLAAVERP 56


>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
           root|Rep: Putative uncharacterized protein - Salmonella
           typhimurium
          Length = 127

 Score = 60.5 bits (140), Expect = 6e-08
 Identities = 27/28 (96%), Positives = 27/28 (96%)
 Frame = +3

Query: 666 PWTSITKIDAQVRGGETRQDYKDTRRFP 749
           P TSITKIDAQVRGGETRQDYKDTRRFP
Sbjct: 22  PLTSITKIDAQVRGGETRQDYKDTRRFP 49


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 58.4 bits (135), Expect = 2e-07
 Identities = 39/74 (52%), Positives = 43/74 (58%)
 Frame = +2

Query: 449 VCVLGALPLPRSLTRCARSFGCGERYQLTQRR*YGYPQNQGITQERTCEQKASKRPGTVK 628
           +C  G +PLPRSLTR ARSFGCGERY+LT           G   E T  +  SK      
Sbjct: 30  ICDTGDIPLPRSLTRYARSFGCGERYRLT--------DGDGNFLEDT-RKTLSKEE---I 77

Query: 629 RPRCWRFSIGSAPL 670
           RPR  RFSIGSAPL
Sbjct: 78  RPRRSRFSIGSAPL 91



 Score = 50.8 bits (116), Expect = 5e-05
 Identities = 22/28 (78%), Positives = 23/28 (82%)
 Frame = +3

Query: 666 PWTSITKIDAQVRGGETRQDYKDTRRFP 749
           P TSI K DAQ+ GGETRQDYKD RRFP
Sbjct: 90  PLTSIAKSDAQISGGETRQDYKDPRRFP 117


>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 55.6 bits (128), Expect = 2e-06
 Identities = 31/57 (54%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
 Frame = +2

Query: 413 CINESANARGXAVCVLGALPLPRSLTRCARSFGCGERYQL-TQRR*YGYPQNQGITQ 580
           CI + A AR  AV VL ALPL RS TRC RS GCG      +  R YG PQ QG+ Q
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGMAQ 322


>UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular
           organisms|Rep: Predicted protein - Nematostella
           vectensis
          Length = 97

 Score = 55.2 bits (127), Expect = 2e-06
 Identities = 24/28 (85%), Positives = 25/28 (89%)
 Frame = +3

Query: 666 PWTSITKIDAQVRGGETRQDYKDTRRFP 749
           P TSITK DAQ+ GGETRQDYKDTRRFP
Sbjct: 58  PLTSITKSDAQISGGETRQDYKDTRRFP 85


>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
           Alpha-hemolysin - Aeromonas hydrophila
          Length = 59

 Score = 44.4 bits (100), Expect = 0.004
 Identities = 20/20 (100%), Positives = 20/20 (100%)
 Frame = +1

Query: 532 HSKAVIRLSTESGDNAGKNM 591
           HSKAVIRLSTESGDNAGKNM
Sbjct: 40  HSKAVIRLSTESGDNAGKNM 59


>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
           Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
           (SV40)
          Length = 364

 Score = 39.9 bits (89), Expect = 0.089
 Identities = 17/19 (89%), Positives = 17/19 (89%)
 Frame = +3

Query: 216 DPXMIRYIDEFGQTTTXMQ 272
           DP MIRYIDEFGQTTT MQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 37.9 bits (84), Expect = 0.36
 Identities = 18/24 (75%), Positives = 20/24 (83%)
 Frame = -3

Query: 483 ERGSGRAPNTQTAXPRALADSLMQ 412
           +R +  APNTQTA PRALADSLMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348


>UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1;
           Beggiatoa sp. SS|Rep: Putative uncharacterized protein -
           Beggiatoa sp. SS
          Length = 114

 Score = 36.3 bits (80), Expect = 1.1
 Identities = 17/41 (41%), Positives = 25/41 (60%)
 Frame = +3

Query: 636 VAGVFP*APPPWTSITKIDAQVRGGETRQDYKDTRRFPXXS 758
           ++ +FP   PP T+ITKI  Q +  +T+ +YK T  FP  S
Sbjct: 65  LSSLFPYNSPPLTTITKIYPQFKNTQTQHNYKYTTPFPLQS 105


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 35.9 bits (79), Expect = 1.5
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +3

Query: 411 SALMNRPTXGXRRFAYW 461
           +ALMNRPT G RRFAYW
Sbjct: 25  AALMNRPTRGERRFAYW 41


>UniRef50_Q12GC2 Cluster: Putative uncharacterized protein
           precursor; n=2; Polaromonas|Rep: Putative
           uncharacterized protein precursor - Polaromonas sp.
           (strain JS666 / ATCC BAA-500)
          Length = 268

 Score = 33.9 bits (74), Expect = 5.9
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = -2

Query: 622 GSWPFAGLLLTCSFLRYP---LILWITVLPPLSELIPLAAAERP 500
           G W  +G  L    L++    LI+W+  LPPL++ IP+A+ + P
Sbjct: 158 GVWLSSGNALPWGLLQFGGMGLIVWLACLPPLADEIPMASGDSP 201


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 650,557,270
Number of Sequences: 1657284
Number of extensions: 10842894
Number of successful extensions: 24201
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 23523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24197
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 84441173866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)