Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_M14
         (884 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    25   0.60 
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    25   0.60 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   4.2  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    22   5.6  

>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 25.4 bits (53), Expect = 0.60
 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
 Frame = +2

Query: 452 KSVGLELENSPAYLHS--RAVTAGFQEYIEARTLFSLMETKKLISWPEIRDEFVFSIPEA 625
           KS+  + ENS    H   R     F++    R + ++ E ++  S  E       SIP  
Sbjct: 67  KSISSDEENSFQGKHKSRRKAPQSFEDIQHQRVMANVRERQRTQSLNEAFASLRKSIPTM 126

Query: 626 ESDKKRTVITMVLHLDYM 679
            SDK   + T+ L   Y+
Sbjct: 127 PSDKLSKIQTLKLAARYI 144


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 25.4 bits (53), Expect = 0.60
 Identities = 12/52 (23%), Positives = 25/52 (48%)
 Frame = +2

Query: 236 PDSPILAMFKNAALKLNERQDRHERLVKLSRDITIESKRIIFLLHSAITEES 391
           P+S +   FKN   K  ++Q +H +   + +   +++K    L  ++ T  S
Sbjct: 109 PESRVQVWFKNRRAKCRQQQKQHNQQQSVEKSSKLKNKSAPILTKTSPTPVS 160


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +2

Query: 209 AREAAASLAPDSPILAMFKNAALKLNERQDRHERLV 316
           A  AAA L P +  +A + NAA      Q  H  ++
Sbjct: 131 AAAAAALLPPQTAAMAAYLNAAAVAAAAQQSHRLMM 166


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 649 YNNGITFGLHAWV 687
           + NGITFG H ++
Sbjct: 149 FANGITFGWHTYI 161


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,052
Number of Sequences: 336
Number of extensions: 3079
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24513621
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)