Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_M14
         (884 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.09c |||TRAX |Schizosaccharomyces pombe|chr 3|||Manual          74   2e-14
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe...    31   0.29 
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    27   2.7  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    26   6.2  

>SPCC736.09c |||TRAX |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 231

 Score = 74.1 bits (174), Expect = 2e-14
 Identities = 52/146 (35%), Positives = 78/146 (53%), Gaps = 1/146 (0%)
 Frame = +2

Query: 281 LNERQDRHERLVKLSRDITIESKRIIFLLHSAITEESTAKVIE-EAKERFQKLIKGPIKS 457
           L E QD+ E++++LSR+ITI+SKR+IFLLH   + +      + +    F+K I   ++S
Sbjct: 12  LQEDQDKREKIIRLSREITIQSKRMIFLLHQTSSSDGFPLPKDFDRTSIFEKKIHKELES 71

Query: 458 VGLELENSPAYLHSRAVTAGFQEYIEARTLFSLMETKKLISWPEIRDEFVFSIPEAESDK 637
           +  EL    A   S A T G QEY+EA T    ++T  L+S  +    F  SI       
Sbjct: 72  LKRELAGLNADKFSSACTHGLQEYVEAVTFKFWLQTGTLLSCKD--SSFRISIN------ 123

Query: 638 KRTVITMVLHLDYMLGLADLTGELMR 715
                     +DY+LG+ D+TGE+MR
Sbjct: 124 ---------FIDYVLGVCDMTGEIMR 140


>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = +2

Query: 239 DSPILAMFKNAALKLNERQDRHERLVKLSRDITIESKRIIFLLHSAITEESTAKVIEEAK 418
           D P +      ALK N   ++    VKL+RD  +    I+   ++ I     AK I++AK
Sbjct: 61  DGPTICKGNEIALKNNITLEKVFETVKLARDAGVTIPIILMGYYNPIFSYGDAKTIQKAK 120

Query: 419 E 421
           E
Sbjct: 121 E 121


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 398 KVIEEAKERFQKLIKGPIKSVGLELENSPAYLH 496
           K  EE K++ Q L +   KSV ++L+  P Y H
Sbjct: 217 KAKEETKQKLQDLYE-EFKSVAVDLQGDPKYQH 248


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 242  SPILAMFKNAALKLNERQDRHERLVKLSR 328
            S ++  F+  +L+L E+Q R E L+K  R
Sbjct: 1408 SSLVRRFEELSLQLQEKQKRDEELIKARR 1436


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,821,492
Number of Sequences: 5004
Number of extensions: 52389
Number of successful extensions: 157
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)