Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_M14
(884 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1144 - 9066832-9066935,9067968-9068169,9068265-9068414,906... 75 1e-13
01_06_1738 + 39570411-39571931 31 0.93
02_02_0528 + 11199799-11200470,11201850-11201951,11202858-112034... 31 1.2
03_05_0040 + 20162923-20163255 30 2.1
06_03_1368 - 29612463-29612638,29613135-29613222,29613334-296134... 29 3.8
04_03_0998 - 21555696-21556080,21556177-21556254,21556333-215564... 29 3.8
03_02_0943 + 12598616-12598789,12599790-12601250 29 5.0
01_06_1110 - 34582267-34582468,34582732-34582819,34589337-345894... 29 6.6
>01_01_1144 -
9066832-9066935,9067968-9068169,9068265-9068414,
9068553-9068637,9069264-9069343,9069972-9070070
Length = 239
Score = 74.5 bits (175), Expect = 1e-13
Identities = 61/179 (34%), Positives = 89/179 (49%)
Frame = +2
Query: 209 AREAAASLAPDSPILAMFKNAALKLNERQDRHERLVKLSRDITIESKRIIFLLHSAITEE 388
A A ++ A S + A F A LN D+ ERLVK SRD+T+ SK+ IF +H I++
Sbjct: 6 AATAHSASAGCSAMKAEFAKHAEYLNTLNDKRERLVKASRDLTMNSKKAIFQVHR-ISKN 64
Query: 389 STAKVIEEAKERFQKLIKGPIKSVGLELENSPAYLHSRAVTAGFQEYIEARTLFSLMETK 568
+ +V+ +A EN + ++ + QEY+EA T +T
Sbjct: 65 NKEEVLSKA-------------------ENDLTVVVNQYIGKLVQEYVEAATFCRFCKTG 105
Query: 569 KLISWPEIRDEFVFSIPEAESDKKRTVITMVLHLDYMLGLADLTGELMRRAINSISNGD 745
L+S EI D + E K + LDY+LG+ADL+GELMR AI IS+G+
Sbjct: 106 TLLSLAEINDSLL------ELGDKSVEPLQINVLDYVLGVADLSGELMRLAIGRISDGE 158
>01_06_1738 + 39570411-39571931
Length = 506
Score = 31.5 bits (68), Expect = 0.93
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Frame = +2
Query: 209 AREAAASL--APDSPILAMFKNAALKLNERQDRHERLVKLSRDITIESKRI---IFLLHS 373
A +A ASL A DSP+ A F N L R RHE V+ ++T + R+ ++ +
Sbjct: 176 ASDALASLRRAADSPLPAEFYNIILHALARLRRHEDTVRFYGEMT-STHRVHPDVYTFNI 234
Query: 374 AITEESTAKVIEEAKERFQKLIKGPIKSVGL 466
I A+ ++ A FQ++ + G+
Sbjct: 235 LINSSCRAEGVDAAMRWFQEMRRWSCSPTGV 265
>02_02_0528 +
11199799-11200470,11201850-11201951,11202858-11203487,
11204287-11204547
Length = 554
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/62 (30%), Positives = 35/62 (56%)
Frame = +2
Query: 152 DEEGKEVTCNRNQQTLSTVAREAAASLAPDSPILAMFKNAALKLNERQDRHERLVKLSRD 331
D +GKEV C + Q++ T + A S I++M + + ++L +R+ + ERL++
Sbjct: 345 DLDGKEVDCWKGQRSSKT--SDFAVS-NDGKLIISMNRESTIRLFDRETKQERLIEEDNT 401
Query: 332 IT 337
IT
Sbjct: 402 IT 403
>03_05_0040 + 20162923-20163255
Length = 110
Score = 30.3 bits (65), Expect = 2.1
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = -3
Query: 663 NTIVITVLFLSLSASGMLKTNSSRISG-QLISFLVSIRENKVLASMYSWK 517
+TIV T+L LS SG++ S QL++ +VSI + L SM SW+
Sbjct: 30 STIVSTILVARLSVSGIVLVLLLPPSAVQLVAEIVSILIGRRLMSMSSWR 79
>06_03_1368 -
29612463-29612638,29613135-29613222,29613334-29613474,
29613561-29613595,29613990-29614054,29614286-29614335,
29614417-29614521,29614608-29614688,29614771-29614852,
29614941-29614995,29615111-29616164,29617202-29617289,
29617379-29617485,29617568-29617686,29617784-29617994
Length = 818
Score = 29.5 bits (63), Expect = 3.8
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = +2
Query: 239 DSPILAMFKNAALKLNERQDRHERLVKLSRDITIESKRIIFLLHSAITEESTAKVIE 409
D P+L NAA +NE + V S ++ + KR I HS IT + + V++
Sbjct: 328 DGPMLQDTTNAAPNINEVGMEESQQVLTSNELEDDGKRNILPEHSDITIQPSESVLD 384
>04_03_0998 - 21555696-21556080,21556177-21556254,21556333-21556424,
21556524-21556620,21557113-21557141,21557620-21557781,
21557981-21558061,21558156-21558314,21558394-21558510,
21558598-21558666,21558753-21558831,21560884-21561050,
21561109-21561229,21561522-21561649,21562293-21562361,
21562408-21562539,21562619-21562991,21563274-21563398,
21563500-21563655,21563785-21564198,21564634-21564691,
21566522-21566648,21568047-21568305,21569005-21569104,
21569231-21569317,21569454-21569692,21569914-21569999,
21570409-21570532,21571111-21574332
Length = 2444
Score = 29.5 bits (63), Expect = 3.8
Identities = 10/24 (41%), Positives = 19/24 (79%)
Frame = -3
Query: 405 ITFAVDSSVIAECNKKIILLLSIV 334
++ A D +++AECN K+++ LSI+
Sbjct: 1176 VSTAADIAILAECNMKLVIALSIM 1199
>03_02_0943 + 12598616-12598789,12599790-12601250
Length = 544
Score = 29.1 bits (62), Expect = 5.0
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +2
Query: 296 DRHERLVKLSRDITIESKRIIFLLHSAITEESTAKVIEEAKERFQK 433
D E+ +L D+ I+ K + +L EST K+I + K+R QK
Sbjct: 69 DIKEQAAQLEHDLIIKEKETLDVLKEL---ESTKKIIADLKQRIQK 111
>01_06_1110 -
34582267-34582468,34582732-34582819,34589337-34589439,
34589886-34589914,34590114-34590144,34590621-34590822,
34591424-34591539,34591784-34592006,34592151-34592238,
34592336-34592407,34592485-34592560,34593822-34593880,
34595341-34595404,34595487-34595618
Length = 494
Score = 28.7 bits (61), Expect = 6.6
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = +2
Query: 431 KLIKGPIKSVGLELENSPAYLHSRAVTAGFQEYIEARTLFSLMETKKLI 577
+LIKG I +G+ S AY++ R + G ++Y+ R++ S +K++
Sbjct: 308 ELIKGAIDFIGINHYYS-AYVNYRPLVEGVRDYVADRSMGSFTIIEKIL 355
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,119,596
Number of Sequences: 37544
Number of extensions: 301623
Number of successful extensions: 859
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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