Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_M14
         (884 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40160-2|AAA81156.1|  547|Caenorhabditis elegans Hypothetical pr...    29   4.4  
U29244-9|AAN60507.1|  681|Caenorhabditis elegans Eps15 (endocyto...    29   4.4  
U29244-8|AAC71084.1|  751|Caenorhabditis elegans Eps15 (endocyto...    29   4.4  
AY027560-1|AAK13051.1|  796|Caenorhabditis elegans EHS-1 protein.      29   4.4  
U42846-1|AAA83600.2|  872|Caenorhabditis elegans Hypothetical pr...    29   5.8  
AC006791-1|ABM01865.2| 1044|Caenorhabditis elegans Metabotropic ...    28   7.7  

>U40160-2|AAA81156.1|  547|Caenorhabditis elegans Hypothetical
           protein C56E10.1 protein.
          Length = 547

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
 Frame = -3

Query: 696 RSANPSM*SKCNTIVITVLFLSLSAS---GMLKTNSSRISGQLISFLVSIRENKV 541
           +SA+  M +K  T + TVL   +S S   G ++TN S  S  +++ +V  R+N V
Sbjct: 179 KSADRQMRAKHKTPIKTVLLSIMSVSKMCGTIQTNDSLSSNAVVTKIVGKRKNSV 233


>U29244-9|AAN60507.1|  681|Caenorhabditis elegans Eps15 (endocytosis
           protein) homologoussequence protein 1, isoform b
           protein.
          Length = 681

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +2

Query: 281 LNERQDRHERLVKLSRDITIESKRIIFLLHSAITEESTAKVIEEAK 418
           L ER+   E +++L  D+TI++  I  L     T EST K +E  K
Sbjct: 432 LVERKTAEEAVLQLEADMTIKNSSIKNLQVELATLESTVKQLERQK 477


>U29244-8|AAC71084.1|  751|Caenorhabditis elegans Eps15 (endocytosis
           protein) homologoussequence protein 1, isoform a
           protein.
          Length = 751

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +2

Query: 281 LNERQDRHERLVKLSRDITIESKRIIFLLHSAITEESTAKVIEEAK 418
           L ER+   E +++L  D+TI++  I  L     T EST K +E  K
Sbjct: 432 LVERKTAEEAVLQLEADMTIKNSSIKNLQVELATLESTVKQLERQK 477


>AY027560-1|AAK13051.1|  796|Caenorhabditis elegans EHS-1 protein.
          Length = 796

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +2

Query: 281 LNERQDRHERLVKLSRDITIESKRIIFLLHSAITEESTAKVIEEAK 418
           L ER+   E +++L  D+TI++  I  L     T EST K +E  K
Sbjct: 477 LVERKTAEEAVLQLEADMTIKNSSIKNLQVELATLESTVKQLERQK 522


>U42846-1|AAA83600.2|  872|Caenorhabditis elegans Hypothetical
           protein T19D2.1 protein.
          Length = 872

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +2

Query: 116 SPSSANTGSRCQDEEGKEVTCNR---NQQTLSTVAREAAASLAPDSPI 250
           +PSS N G+ CQ +E + + C+R   N  ++   A    + L  ++ I
Sbjct: 482 NPSSNNGGAPCQGDEARGMVCHRDVCNGDSIENYATRVCSRLRDENAI 529


>AC006791-1|ABM01865.2| 1044|Caenorhabditis elegans Metabotropic
            glutamate receptorfamily protein 3, isoform d protein.
          Length = 1044

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 17/64 (26%), Positives = 27/64 (42%)
 Frame = -3

Query: 627  SASGMLKTNSSRISGQLISFLVSIRENKVLASMYSWKPAVTARECKYAGLFSSSKPTDLI 448
            SA G L     R   QL          + ++S  S+KP+++A E  +       +PT  I
Sbjct: 872  SAVGRLVNQQMRFMSQLTYNPDGCNSYQPMSSNQSYKPSISAEESSHTSNAQVQQPTRAI 931

Query: 447  GPFI 436
             P +
Sbjct: 932  PPHV 935


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,367,386
Number of Sequences: 27780
Number of extensions: 280728
Number of successful extensions: 770
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)