Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_M13
(880 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar... 30 0.38
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90... 29 0.66
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 29 1.2
SPAC17C9.14 |||Pex19 protein family|Schizosaccharomyces pombe|ch... 27 2.7
SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyce... 27 3.5
SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces pom... 27 4.7
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac... 27 4.7
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc... 27 4.7
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 27 4.7
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac... 26 6.1
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po... 26 6.1
>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 768
Score = 30.3 bits (65), Expect = 0.38
Identities = 24/109 (22%), Positives = 47/109 (43%)
Frame = +3
Query: 282 DLGDLIIERRNHKVPHDLRNVENPSQRPEHRDPQDYSALNERKSQDKHTENLIPNLTNSH 461
D+ + I +HK H VE + ++ S +RK + + + + N+H
Sbjct: 26 DISNFFISSASHKSEH----VEVSQSSSDSKNVDGRSTSEKRKVES--VKLVDESKHNNH 79
Query: 462 KSYGYTGIDKDESIVSQDKVAFTNDNGNLYXSKESHSENSGTSTQDTVP 608
G ++++ +IVS+ K T + + S + +SG ST +P
Sbjct: 80 DDTGTQNVERENNIVSEAKKQKTLGSSSSSSDAVSSNNDSGASTPIPLP 128
>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 537
Score = 29.5 bits (63), Expect = 0.66
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 12/70 (17%)
Frame = +3
Query: 282 DLGDLIIERRN----HKVPHD------LRNVENPSQRPEHRD-PQDYSALNERKSQDKHT 428
DL D + E+RN H HD +RN+E+ + + E D D +NE++S DK
Sbjct: 33 DLNDSLDEQRNAYNEHCKNHDQQPSQQVRNMEDEANQYEQTDSSSDQEVMNEKQSLDKEN 92
Query: 429 EN-LIPNLTN 455
N IP+ N
Sbjct: 93 RNDNIPHENN 102
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/61 (22%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Frame = +3
Query: 303 ERRNHKVPHDLRNVENPSQRPEHRDPQD---YSALNERK----SQDKHTENLIPNLTNSH 461
++ +HK P D + + P + H+ P+D + +++ ++KH E N+ +SH
Sbjct: 379 DKEHHKGPKDKEHHKGPKDKEHHKGPKDKEHHKGPKDKEHHQGPKEKHNERPEQNMQSSH 438
Query: 462 K 464
+
Sbjct: 439 E 439
Score = 27.9 bits (59), Expect = 2.0
Identities = 10/41 (24%), Positives = 20/41 (48%)
Frame = +3
Query: 303 ERRNHKVPHDLRNVENPSQRPEHRDPQDYSALNERKSQDKH 425
++ +HK P D + + P + H+ P+D K ++ H
Sbjct: 361 DKEHHKGPKDKEHHKGPKDKEHHKGPKDKEHHKGPKDKEHH 401
Score = 27.9 bits (59), Expect = 2.0
Identities = 10/41 (24%), Positives = 20/41 (48%)
Frame = +3
Query: 303 ERRNHKVPHDLRNVENPSQRPEHRDPQDYSALNERKSQDKH 425
++ +HK P D + + P + H+ P+D K ++ H
Sbjct: 370 DKEHHKGPKDKEHHKGPKDKEHHKGPKDKEHHKGPKDKEHH 410
>SPAC17C9.14 |||Pex19 protein family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 232
Score = 27.5 bits (58), Expect = 2.7
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +3
Query: 273 NIPDLGDLIIERRNHKVPHDLRNVENPSQRPEHRDPQDYSALNERKSQDKHTENLIPNLT 452
N DL DL + VP +N E EH+ + S NER D + +LI +
Sbjct: 23 NFDDLDDLDDILDDLDVPSAFKN-EEKKNIDEHKQTGNTSKENERIKNDDNLNSLIQEMM 81
Query: 453 NSHKSY-GYTGID 488
+ + G +G+D
Sbjct: 82 SKFEDLGGPSGLD 94
>SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 393
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/52 (25%), Positives = 24/52 (46%)
Frame = +3
Query: 483 IDKDESIVSQDKVAFTNDNGNLYXSKESHSENSGTSTQDTVPKIIYVQTDGL 638
+ K + + Q + A +GN SKE+ SEN + ++Y + D +
Sbjct: 15 LKKQQQLEKQKQEASYELSGNSSPSKENGSENVDNGEMEDETMLVYTEEDNI 66
>SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 338
Score = 26.6 bits (56), Expect = 4.7
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -2
Query: 273 CSFHQENLHHNNHSRFRSHITVFEDSL 193
CS +++ L H +H + HI + E +L
Sbjct: 257 CSINKDALTHRSHESLQQHIELLESTL 283
>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 446
Score = 26.6 bits (56), Expect = 4.7
Identities = 23/127 (18%), Positives = 48/127 (37%), Gaps = 2/127 (1%)
Frame = +3
Query: 387 YSALNERKSQDKHTENLIPNLTNSHKSYGYTGIDKDESIVSQDKVAFTNDNGNLYXSKES 566
+ LNE +D + I L + YG + +++ + GN K S
Sbjct: 92 FGKLNENTVKDN--VSFIFELLDEMIDYGIIQTTEPDALARSVSITAVKKKGNALSLKRS 149
Query: 567 HSENSGTSTQDTVPKIIYVQTDGL--QDNQLYXVAGSSGDSIIMSRAXTNKGPLYYIVKP 740
HS +T +P + + G+ + N +Y + +I S + + +VK
Sbjct: 150 HSSQLAHTTSSEIPGSVPWRRAGIKYRKNSIYIDIVERMNLLISSTGNVLRSDVSGVVKM 209
Query: 741 XILMAAI 761
+++ +
Sbjct: 210 RAMLSGM 216
>SPBC19G7.06 |mbx1||MADS-box transcription factor
Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 26.6 bits (56), Expect = 4.7
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = +3
Query: 426 TENLIPNLTNSHKSYGYTGIDKDESIVSQDKVAFTNDNGNLYXSK--ESHSENSG 584
T+N IP LT ++YG + D S V + + NG S+ SH+ G
Sbjct: 211 TDNFIPFLTPKRQAYGQSSSRADRSSVRRSQSFKNRRNGKPRISRLHTSHASIDG 265
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +2
Query: 50 LIISAVKHGVDSTVNLGLFILPERELS 130
LI+S +KH ++ ++L + +LP + LS
Sbjct: 219 LILSTIKHAEENNLDLSVRLLPSKVLS 245
>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/57 (22%), Positives = 29/57 (50%)
Frame = +3
Query: 297 IIERRNHKVPHDLRNVENPSQRPEHRDPQDYSALNERKSQDKHTENLIPNLTNSHKS 467
++E+R + + D ++ E + HR QD S ER ++H+ + + S+++
Sbjct: 153 LMEKRKYSLDSDRKSKERRHRDRHHRSNQDRS--RERSDNEQHSSDKREHSRRSYRN 207
>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 811
Score = 26.2 bits (55), Expect = 6.1
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +2
Query: 656 SSGRKQRRLHNYVSRPNXQRSLVLYSETXYFNG---CNN 763
SS +K + +VSR S VL +ET FN C+N
Sbjct: 677 SSSKKPKTFIQWVSRDKESNSPVLIAETRLFNNLFKCDN 715
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,044,431
Number of Sequences: 5004
Number of extensions: 62336
Number of successful extensions: 201
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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