Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_M13
         (880 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   8.6  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   8.6  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   8.6  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   8.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   8.6  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 41  LKILIISAVKHGVDSTVNLGLFILPER 121
           L IL++ A+   + S + LGL   P+R
Sbjct: 305 LTILLVWAISAAIGSPIVLGLNNTPDR 331


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 18/68 (26%), Positives = 38/68 (55%)
 Frame = -3

Query: 524 RHFVLTNNRLVLIYTSVTIGFMTIC*VRY*IFSMLILRLSFIKSRVILRVAMFWSLTWIL 345
           +H++ T   L LI +S+ + ++ +   ++  FS     L   ++  ILR+A   SL  +L
Sbjct: 162 KHYLRTWFFLDLI-SSIPLDYIFLIFNQFQDFSESFQILHAGRALRILRLAKLLSLVRLL 220

Query: 344 DVAKVMRY 321
            +++++RY
Sbjct: 221 RLSRLVRY 228


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 18/68 (26%), Positives = 38/68 (55%)
 Frame = -3

Query: 524 RHFVLTNNRLVLIYTSVTIGFMTIC*VRY*IFSMLILRLSFIKSRVILRVAMFWSLTWIL 345
           +H++ T   L LI +S+ + ++ +   ++  FS     L   ++  ILR+A   SL  +L
Sbjct: 162 KHYLRTWFFLDLI-SSIPLDYIFLIFNQFQDFSESFQILHAGRALRILRLAKLLSLVRLL 220

Query: 344 DVAKVMRY 321
            +++++RY
Sbjct: 221 RLSRLVRY 228


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 18/68 (26%), Positives = 38/68 (55%)
 Frame = -3

Query: 524 RHFVLTNNRLVLIYTSVTIGFMTIC*VRY*IFSMLILRLSFIKSRVILRVAMFWSLTWIL 345
           +H++ T   L LI +S+ + ++ +   ++  FS     L   ++  ILR+A   SL  +L
Sbjct: 162 KHYLRTWFFLDLI-SSIPLDYIFLIFNQFQDFSESFQILHAGRALRILRLAKLLSLVRLL 220

Query: 344 DVAKVMRY 321
            +++++RY
Sbjct: 221 RLSRLVRY 228


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/47 (19%), Positives = 23/47 (48%)
 Frame = +3

Query: 306 RRNHKVPHDLRNVENPSQRPEHRDPQDYSALNERKSQDKHTENLIPN 446
           +R+H + +   ++++ + +  HR  Q      +R+ Q +    L P+
Sbjct: 139 QRHHHLQNHHHHLQSTAVQDHHRPYQQQQQQQQRQQQRQEERRLRPD 185


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,382
Number of Sequences: 438
Number of extensions: 4021
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)