Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_M11
         (883 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|c...    97   4e-21
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    29   0.88 
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    27   2.7  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   6.2  
SPAC22E12.14c |sck2||serine/threonine protein kinase Sck2|Schizo...    26   6.2  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    26   8.2  
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch...    26   8.2  

>SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 433

 Score = 96.7 bits (230), Expect = 4e-21
 Identities = 49/98 (50%), Positives = 67/98 (68%)
 Frame = +1

Query: 169 QVRHLNVHEYISYTLLRDHGIPVPKFNVAKTKDEAIKFATELNTKDIVLKAQVLAGGRGK 348
           Q R+L +HEYIS+ +LR  G+ VP+   A++ +EA K A +L   D+V+KAQVLAGGRGK
Sbjct: 19  QKRNLALHEYISHDILRKFGVDVPRGAPARSGEEAEKVARDLKVTDLVVKAQVLAGGRGK 78

Query: 349 GTFKNGLKGGVRMVNTPEVAGDIAGKMLKQLLVTKQTG 462
           G F +GL+GGVR V     A   A +M+   L+T+QTG
Sbjct: 79  GQFDSGLRGGVRPVYDATEARMFAEQMIGHKLITRQTG 116



 Score = 79.4 bits (187), Expect = 6e-16
 Identities = 43/114 (37%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
 Frame = +3

Query: 525 YYVAIMMERSFNGPVIIASSQGGVNIEDVAAENPDAMTYEPIDIVSGITDDQICRVIEKI 704
           YY AI+M+R    P+I+AS QGGV+IE VAAENP A+    +     +       +++K+
Sbjct: 137 YYFAILMDRENQCPMIVASDQGGVDIETVAAENPSAIIKRSLPNSPNLDPHIAEELVDKL 196

Query: 705 GLQEFA-TEAHGMIKKMYDLFLKXDALLIEVNPYAXDALTGQFFCLDAKFRFDD 863
           G    +  +A   I K+Y +F   DA  +E+NP A +    +  C+DAK  FDD
Sbjct: 197 GFSSSSKPKAVDAIVKLYKVFNDCDATQVEINPLA-ETTDHKVLCMDAKLNFDD 249



 Score = 31.5 bits (68), Expect = 0.16
 Identities = 13/20 (65%), Positives = 16/20 (80%)
 Frame = +2

Query: 461 GAAGRICNMVMVTERKFPRR 520
           G AG+ICN+V V ERKF R+
Sbjct: 116 GPAGKICNVVYVCERKFIRK 135


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1822

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +1

Query: 379  VRMVNTPEVAGDIAGKMLKQLLVTKQTGGSRTNLQHGHGHREEVPTQGNTTW 534
            V  +   E   + A  +LK+LL  ++ G  +TN+ +   H E +      TW
Sbjct: 928  VACIQASEEMANKATSVLKKLLYQQKHGSQKTNVYYNATHFEHIGPMLEATW 979


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +1

Query: 382 RMVNTPEVAGDIAGKML--KQLLVTKQTGGSRTNLQHGHGHREEV 510
           R+VN   +  D  G +   + +L+TK  GG+  N  +G+ H E +
Sbjct: 72  RVVNN--ILSDTYGSLYNPENILITKNGGGAGNNWANGYSHAERI 114


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 419  AISPATSGVLTIRTPPLSPFLKVPFPRPPA 330
            +++PAT+   T+  P  S F  VP P PPA
Sbjct: 1508 SVAPATAPSSTL-PPSQSSFAHVPSPAPPA 1536


>SPAC22E12.14c |sck2||serine/threonine protein kinase
           Sck2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 646

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 203 VILYYGTMEFLYPNLMWPKP 262
           V++ +GT EF+ P L W  P
Sbjct: 123 VVVQFGTTEFVSPPLKWESP 142


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 211  LLRDHGIPVPKFNVAKTKDEAIKFATELNTKDIVLKAQVLAG 336
            +L D G+  PK+    + DEA KF   +    +V  + VL+G
Sbjct: 1135 MLDDIGVDQPKWKELTSFDEADKFCDTVGYPVLVRPSYVLSG 1176


>SPBC215.08c |arg4||carbamoyl-phosphate synthase
           Arg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1160

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +1

Query: 214 LRDHGIPVPKFNVAKTKDEAIKFATELNTKDIVLKAQVLAGGRGKGTFKN 363
           L +  IP+ +     T DEA++ A E  +  +++++    GG G G   N
Sbjct: 215 LNEINIPIAESVAVSTVDEALQ-AAEKVSYPVIIRSAYSLGGLGSGFANN 263


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,588,711
Number of Sequences: 5004
Number of extensions: 76357
Number of successful extensions: 190
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)