Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_M11
(883 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0655 + 24761323-24761424,24761565-24761675,24762361-247624... 93 3e-19
12_02_0299 - 17051570-17052474,17053542-17053755 31 1.2
09_06_0066 + 20641144-20641459,20642899-20643290,20643379-206438... 31 1.6
05_01_0498 + 4152729-4152820,4153316-4153425,4153840-4153877,415... 31 1.6
10_08_0631 - 19435796-19436452,19437237-19438130 30 2.8
04_01_0069 - 697811-697876,697956-698166,698265-698359,698448-69... 30 2.8
07_03_0967 - 23023019-23023158,23023676-23023767,23024474-230247... 29 4.9
04_03_0686 + 18701543-18701917,18702658-18702702,18703175-187032... 29 4.9
06_03_1069 - 27345207-27345488,27345746-27346078,27346252-273470... 29 6.5
06_03_0429 - 20701107-20701534,20701628-20701847 29 6.5
01_04_0106 + 16068729-16070651 29 6.5
11_04_0227 + 15094941-15095445,15095773-15095865,15096209-150963... 28 8.6
>02_04_0655 +
24761323-24761424,24761565-24761675,24762361-24762472,
24763049-24763113,24763727-24763804,24764550-24764624,
24764747-24764899,24764988-24765122,24765325-24765495
Length = 333
Score = 93.1 bits (221), Expect = 3e-19
Identities = 50/101 (49%), Positives = 68/101 (67%), Gaps = 2/101 (1%)
Frame = +1
Query: 166 QQVRHLNVHEYISYTLLRDHGIPVPKFNVAKTKDEAIKFATEL--NTKDIVLKAQVLAGG 339
QQ+R LN+HEY L+ +GI VP+ A + +E + + K+IV+K+Q+LAGG
Sbjct: 23 QQLRRLNIHEYQGAELMGKYGINVPRGAAAGSVEEVKNTLKNVFPSEKEIVVKSQILAGG 82
Query: 340 RGKGTFKNGLKGGVRMVNTPEVAGDIAGKMLKQLLVTKQTG 462
RG GTFK+GL+GGV +V E A +A KML Q+LVTKQTG
Sbjct: 83 RGLGTFKSGLQGGVHIVKAEE-AESLAAKMLGQILVTKQTG 122
Score = 92.7 bits (220), Expect = 4e-19
Identities = 47/113 (41%), Positives = 69/113 (61%), Gaps = 1/113 (0%)
Frame = +3
Query: 528 YVAIMMERSFNGPVIIASSQGGVNIEDVAAENPDAMTYEPIDIVSGITDDQICRVIEKIG 707
Y AI ++R+ GP+IIA S+GG +IED+A + PD + PID+ GITDD +V++ +
Sbjct: 144 YFAITLDRNTAGPLIIACSKGGTSIEDLAEKYPDMIIKVPIDVFKGITDDDAAKVVDGLA 203
Query: 708 LQEFATEAH-GMIKKMYDLFLKXDALLIEVNPYAXDALTGQFFCLDAKFRFDD 863
+ ++ IKK+Y+LF K D L+E+NP A A + DAK FDD
Sbjct: 204 PKTADRQSSIEQIKKLYELFCKSDCTLLEINPLAETA-DNKLVAADAKLNFDD 255
>12_02_0299 - 17051570-17052474,17053542-17053755
Length = 372
Score = 31.1 bits (67), Expect = 1.2
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -3
Query: 464 PPVCFVT-RSCLSIFPAISPATSGVLTIRTPPLSPFLKVPFPRPPA 330
PP+ F T R P ++P L PP+ PFL P P PPA
Sbjct: 215 PPIPFCTPRPWFPPIPFLTPPPPPFLPFPLPPI-PFLTPPSPPPPA 259
>09_06_0066 +
20641144-20641459,20642899-20643290,20643379-20643829,
20643985-20644046
Length = 406
Score = 30.7 bits (66), Expect = 1.6
Identities = 26/86 (30%), Positives = 35/86 (40%), Gaps = 7/86 (8%)
Frame = -2
Query: 474 RPAAPCLFCY*ELFKHLSCYITSNFRCVDHSNSTFKSILKGTFPSTTSK---NLCF*NYV 304
+ AAP L + S + +SNF V + SI G F S F +
Sbjct: 247 KAAAPGLVYFHIPLPEFSSFTSSNFTGVKQEGISSPSINSGFFASMVEAGDVKAAFIGHD 306
Query: 303 FGIEFCGKLN----CLILGFGHIKFG 238
+FCGKLN C GFG+ +G
Sbjct: 307 HVNDFCGKLNGIQLCYAGGFGYHAYG 332
>05_01_0498 +
4152729-4152820,4153316-4153425,4153840-4153877,
4154335-4154433,4154461-4157475
Length = 1117
Score = 30.7 bits (66), Expect = 1.6
Identities = 18/40 (45%), Positives = 23/40 (57%)
Frame = -3
Query: 347 FPRPPARTCAFRTMSLVLSSVANLIASSLVLATLNLGTGI 228
F P + A +SLVL+ LI+SS+VLA L L GI
Sbjct: 110 FQHPNTASVAQLMVSLVLAMAGKLISSSIVLALLPLFCGI 149
>10_08_0631 - 19435796-19436452,19437237-19438130
Length = 516
Score = 29.9 bits (64), Expect = 2.8
Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -3
Query: 377 PPLSPFLKVPFPRPPARTCAFRTMSLVLSSVANLIASSL-VLATLN 243
PP P L +P P PP R C T L L SV L+A++L VL L+
Sbjct: 10 PPPPPPLPLPLPLPP-RNCPLATAVLALLSV--LLATALWVLLVLS 52
>04_01_0069 -
697811-697876,697956-698166,698265-698359,698448-698513,
698595-698643,698720-698770,698856-698908,699263-699331,
699874-699928,700011-700099,700217-700302,700376-700432,
700575-700716,701637-702032
Length = 494
Score = 29.9 bits (64), Expect = 2.8
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = -3
Query: 410 PATSGVLTIRTPPLSPFLKVPFPRPPARTCAFRTMSLVLSSVANLIASS 264
PA V R PP P + V P PPA T A T + + N +A++
Sbjct: 84 PAAPAVTPARPPPQQPAVAVAAP-PPATTMATATEEVAAPATGNPMANA 131
>07_03_0967 -
23023019-23023158,23023676-23023767,23024474-23024720,
23024822-23025134
Length = 263
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -3
Query: 374 PLSPFLKVPFPRPPARTCAFRTMSLVLSSVANLIASSLVLATLNLG 237
P + F ++P PRPP+R AF ++ A A+SL L + G
Sbjct: 7 PAATFPRLPPPRPPSRP-AFAAALAAAAAAAAAAAASLTLTAKSAG 51
>04_03_0686 +
18701543-18701917,18702658-18702702,18703175-18703289,
18703644-18703713,18703796-18703844,18704319-18704416,
18704984-18705122,18705261-18705410
Length = 346
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -3
Query: 413 SPATSGVLTIRTPPLSPFLKVPFPRPPARTCAFRTMSL 300
+PA S LT+ P SP +++ RPPART R + L
Sbjct: 5 TPAASATLTLLLPA-SPPMRLRARRPPARTSRSRPLLL 41
>06_03_1069 -
27345207-27345488,27345746-27346078,27346252-27347041,
27347153-27347351,27347522-27347667,27347823-27348094,
27348161-27348262,27348351-27348470,27348576-27348729,
27348986-27349114,27349554-27349900
Length = 957
Score = 28.7 bits (61), Expect = 6.5
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = -2
Query: 528 SIXLRGNFLSVTMTMLQIRPAAPCLFCY*ELFKHLSCYITSNF 400
++ LR + SV ++ Q+RP +P + + F Y+ NF
Sbjct: 80 AVSLRSHLASVLQSLSQVRPRSPASWIWISQFTRAQFYVHVNF 122
>06_03_0429 - 20701107-20701534,20701628-20701847
Length = 215
Score = 28.7 bits (61), Expect = 6.5
Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Frame = -3
Query: 422 PAISPATS--GVLTIRTPPLSPFLKVPFPRPPARTCAFRTMSLVLSSVANLIASSLVLAT 249
PA SP +T TPP P P P P T S SS A A +L+LA
Sbjct: 145 PAASPIAKPPAAVTAATPPPPPPPPSPSPSPSPAPQEAATASAATSSSAATAAHALLLAA 204
Query: 248 L 246
+
Sbjct: 205 M 205
>01_04_0106 + 16068729-16070651
Length = 640
Score = 28.7 bits (61), Expect = 6.5
Identities = 27/85 (31%), Positives = 34/85 (40%), Gaps = 1/85 (1%)
Frame = -3
Query: 506 SSR*P*PCCKFVLLPPVCFVTRSCLSIFPAISPATSGVLTIRTPPLSPFLKVPFPRPPAR 327
SS P P +LL P RS PA +PA + L PFL P P +
Sbjct: 2 SSSLPSPLLFLLLLLPFPAAVRSQ----PAAAPAPQQQCPLNFTALRPFLAQPLPPDDSA 57
Query: 326 TCAFRTMSLVLSSVANLIAS-SLVL 255
C S+ L +L A+ S VL
Sbjct: 58 RCLLAVQSVRLLLALHLAATGSFVL 82
>11_04_0227 +
15094941-15095445,15095773-15095865,15096209-15096308,
15096799-15096874,15099906-15100017,15100924-15101012,
15101137-15101223,15101623-15101678,15102114-15102462
Length = 488
Score = 28.3 bits (60), Expect = 8.6
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -3
Query: 605 FNVDTTLR*SNDDWTI-ETAFHHDCHVVXPCVGTSSR*P*PCCK 477
FN LR ND+ + + A + + C GTSSR PCC+
Sbjct: 254 FNKKVVLRLENDNGSCCKVALFSVDYSLRECYGTSSRHASPCCR 297
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,197,122
Number of Sequences: 37544
Number of extensions: 510794
Number of successful extensions: 1572
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1567
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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