Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_M11
         (883 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68004-1|CAA91981.1|  435|Caenorhabditis elegans Hypothetical pr...   106   2e-23
U41557-3|AAA83304.1|  415|Caenorhabditis elegans Hypothetical pr...    96   3e-20
Z81079-5|CAB03082.2|  505|Caenorhabditis elegans Hypothetical pr...    28   7.7  
Z74040-3|CAB54276.3|  246|Caenorhabditis elegans Hypothetical pr...    28   7.7  
Z74040-2|CAA98513.1|  287|Caenorhabditis elegans Hypothetical pr...    28   7.7  
Z74040-1|CAA98514.2|  340|Caenorhabditis elegans Hypothetical pr...    28   7.7  
U88311-8|AAB42341.2|  918|Caenorhabditis elegans Hypothetical pr...    28   7.7  
AY204202-1|AAO39203.1|  339|Caenorhabditis elegans nuclear recep...    28   7.7  
AY204201-1|AAO39202.1|  409|Caenorhabditis elegans nuclear recep...    28   7.7  
AY204200-1|AAO39201.1|  304|Caenorhabditis elegans nuclear recep...    28   7.7  
AJ238443-1|CAB41469.1|  454|Caenorhabditis elegans TBP-like fact...    28   7.7  
AF408754-1|AAO27833.1|  418|Caenorhabditis elegans nuclear recep...    28   7.7  
AF228692-1|AAF59926.1|  505|Caenorhabditis elegans TBP-like fact...    28   7.7  
AC084155-11|AAQ91893.1|  304|Caenorhabditis elegans Nuclear horm...    28   7.7  
AC084155-10|AAG23368.3|  418|Caenorhabditis elegans Nuclear horm...    28   7.7  

>Z68004-1|CAA91981.1|  435|Caenorhabditis elegans Hypothetical
           protein F47B10.1 protein.
          Length = 435

 Score =  106 bits (255), Expect = 2e-23
 Identities = 51/113 (45%), Positives = 75/113 (66%), Gaps = 1/113 (0%)
 Frame = +3

Query: 525 YYVAIMMERSFNGPVIIASSQGGVNIEDVAAENPDAMTYEPIDIVSGITDDQICRVIEKI 704
           YY +I ++R+ NGP++IASSQGGVNIE+VAA NPDA+   PID+  GIT +    +  K+
Sbjct: 138 YYFSITLDRNTNGPIVIASSQGGVNIEEVAATNPDAIVKMPIDVNVGITKELAHEIAVKM 197

Query: 705 GL-QEFATEAHGMIKKMYDLFLKXDALLIEVNPYAXDALTGQFFCLDAKFRFD 860
           G  ++   +A  +I+K+Y +F   DA L+E+NP A D + G  +C+D K   D
Sbjct: 198 GFSKDCEQQASEIIEKLYQMFKGSDATLVEINPMAED-VNGDVYCMDCKLLLD 249



 Score = 88.6 bits (210), Expect = 5e-18
 Identities = 45/95 (47%), Positives = 62/95 (65%)
 Frame = +1

Query: 175 RHLNVHEYISYTLLRDHGIPVPKFNVAKTKDEAIKFATELNTKDIVLKAQVLAGGRGKGT 354
           R L +HE+    +L+++ I VP F VA+  + A   A  +  KD V+KAQVLAGGRGKG 
Sbjct: 22  RTLMLHEHHGMKILQNYEIKVPPFGVAQDAETAFSEAKRIGGKDYVVKAQVLAGGRGKGR 81

Query: 355 FKNGLKGGVRMVNTPEVAGDIAGKMLKQLLVTKQT 459
           F +GL+GGV++V TP+     AG M+   L+TKQT
Sbjct: 82  FSSGLQGGVQIVFTPDEVKQKAGMMIGANLITKQT 116


>U41557-3|AAA83304.1|  415|Caenorhabditis elegans Hypothetical
           protein C50F7.4 protein.
          Length = 415

 Score = 96.3 bits (229), Expect = 3e-20
 Identities = 46/113 (40%), Positives = 72/113 (63%), Gaps = 1/113 (0%)
 Frame = +3

Query: 528 YVAIMMERSFNGPVIIASSQGGVNIEDVAAENPDAMTYEPIDIVSGITDDQICRVIEKIG 707
           Y+A++M+R  NGPV++AS  GG++IE VA + P+ +   PIDI  G+T+ Q  ++ + + 
Sbjct: 137 YLAVLMDRESNGPVVVASPDGGMDIEAVAEKTPERIFKTPIDIQMGMTEGQSLKIAKDLQ 196

Query: 708 LQ-EFATEAHGMIKKMYDLFLKXDALLIEVNPYAXDALTGQFFCLDAKFRFDD 863
            + +    A   IK++YDLF+  DA  +E+NP    A  G+ FC+DAK  FDD
Sbjct: 197 FEGKLIGVAAQEIKRLYDLFIAVDATQVEINPLVETA-DGRVFCVDAKMNFDD 248



 Score = 76.2 bits (179), Expect = 3e-14
 Identities = 45/110 (40%), Positives = 61/110 (55%), Gaps = 2/110 (1%)
 Frame = +1

Query: 136 ASSANKFPSKQQVRHLNVHEYISYTLLRDHGIPVPKFNVAKTKDEAIKFATELNTKDIVL 315
           A + +K   K Q R LN+ E+ S  +L  HG  V  F VA  + EA +        + V+
Sbjct: 5   AGNLSKSMMKSQRRFLNLQEFQSKEILEKHGCSVQNFVVASNRKEAEEKWMSFGDHEYVV 64

Query: 316 KAQVLAGGRGKGTFKNGLK--GGVRMVNTPEVAGDIAGKMLKQLLVTKQT 459
           KAQ+LAGGRGKG F NG K  GGV +    + A +   +M+ + LVTKQT
Sbjct: 65  KAQILAGGRGKGKFINGTKGIGGVFITKEKDAALEAIDEMIGKRLVTKQT 114


>Z81079-5|CAB03082.2|  505|Caenorhabditis elegans Hypothetical
           protein F39H11.2 protein.
          Length = 505

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 591 GVNIEDVAAENPDAMTYEP 647
           G+ IE+VAA+ P   TYEP
Sbjct: 372 GIKIEEVAAKYPSESTYEP 390


>Z74040-3|CAB54276.3|  246|Caenorhabditis elegans Hypothetical
           protein K10D6.2c protein.
          Length = 246

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -3

Query: 698 FDNTANLIISNTRNNIN 648
           FDN+A L+I NT NNI+
Sbjct: 79  FDNSAELVIQNTLNNID 95


>Z74040-2|CAA98513.1|  287|Caenorhabditis elegans Hypothetical
           protein K10D6.2b protein.
          Length = 287

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -3

Query: 698 FDNTANLIISNTRNNIN 648
           FDN+A L+I NT NNI+
Sbjct: 79  FDNSAELVIQNTLNNID 95


>Z74040-1|CAA98514.2|  340|Caenorhabditis elegans Hypothetical
           protein K10D6.2a protein.
          Length = 340

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -3

Query: 698 FDNTANLIISNTRNNIN 648
           FDN+A L+I NT NNI+
Sbjct: 79  FDNSAELVIQNTLNNID 95


>U88311-8|AAB42341.2|  918|Caenorhabditis elegans Hypothetical
           protein C10H11.1 protein.
          Length = 918

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/36 (33%), Positives = 25/36 (69%)
 Frame = +3

Query: 609 VAAENPDAMTYEPIDIVSGITDDQICRVIEKIGLQE 716
           ++ +NP+  TYE + +V+   DD++  ++E++ LQE
Sbjct: 465 ISKKNPEVKTYEDVKVVN--QDDEVADLVERM-LQE 497


>AY204202-1|AAO39203.1|  339|Caenorhabditis elegans nuclear receptor
           NHR-114 protein.
          Length = 339

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = -3

Query: 446 TRSCLSIFPAISPATSGVLTIRTPPLSPFLKVPFPRPPARTCAFRTMS 303
           T  C S   A +P +   L +  PP+SP L    P  P R C  +T++
Sbjct: 108 TSDCSSDEGASTPPSVSPLQLSPPPISPLLFQAAPLKP-RRCILQTLA 154


>AY204201-1|AAO39202.1|  409|Caenorhabditis elegans nuclear receptor
           NHR-114 protein.
          Length = 409

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = -3

Query: 446 TRSCLSIFPAISPATSGVLTIRTPPLSPFLKVPFPRPPARTCAFRTMS 303
           T  C S   A +P +   L +  PP+SP L    P  P R C  +T++
Sbjct: 99  TSDCSSDEGASTPPSVSPLQLSPPPISPLLFQAAPLKP-RRCILQTLA 145


>AY204200-1|AAO39201.1|  304|Caenorhabditis elegans nuclear receptor
           NHR-114 protein.
          Length = 304

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = -3

Query: 446 TRSCLSIFPAISPATSGVLTIRTPPLSPFLKVPFPRPPARTCAFRTMS 303
           T  C S   A +P +   L +  PP+SP L    P  P R C  +T++
Sbjct: 108 TSDCSSDEGASTPPSVSPLQLSPPPISPLLFQAAPLKP-RRCILQTLA 154


>AJ238443-1|CAB41469.1|  454|Caenorhabditis elegans TBP-like factor
           protein.
          Length = 454

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 591 GVNIEDVAAENPDAMTYEP 647
           G+ IE+VAA+ P   TYEP
Sbjct: 372 GIKIEEVAAKYPSESTYEP 390


>AF408754-1|AAO27833.1|  418|Caenorhabditis elegans nuclear receptor
           protein protein.
          Length = 418

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = -3

Query: 446 TRSCLSIFPAISPATSGVLTIRTPPLSPFLKVPFPRPPARTCAFRTMS 303
           T  C S   A +P +   L +  PP+SP L    P  P R C  +T++
Sbjct: 108 TSDCSSDEGASTPPSVSPLQLSPPPISPLLFQAAPLKP-RRCILQTLA 154


>AF228692-1|AAF59926.1|  505|Caenorhabditis elegans TBP-like factor
           protein.
          Length = 505

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 591 GVNIEDVAAENPDAMTYEP 647
           G+ IE+VAA+ P   TYEP
Sbjct: 372 GIKIEEVAAKYPSESTYEP 390


>AC084155-11|AAQ91893.1|  304|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 114, isoform b protein.
          Length = 304

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = -3

Query: 446 TRSCLSIFPAISPATSGVLTIRTPPLSPFLKVPFPRPPARTCAFRTMS 303
           T  C S   A +P +   L +  PP+SP L    P  P R C  +T++
Sbjct: 108 TSDCSSDEGASTPPSVSPLQLSPPPISPLLFQAAPLKP-RRCILQTLA 154


>AC084155-10|AAG23368.3|  418|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 114, isoform a protein.
          Length = 418

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = -3

Query: 446 TRSCLSIFPAISPATSGVLTIRTPPLSPFLKVPFPRPPARTCAFRTMS 303
           T  C S   A +P +   L +  PP+SP L    P  P R C  +T++
Sbjct: 108 TSDCSSDEGASTPPSVSPLQLSPPPISPLLFQAAPLKP-RRCILQTLA 154


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,963,556
Number of Sequences: 27780
Number of extensions: 437890
Number of successful extensions: 1099
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1093
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)