Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_M08
         (870 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch...    30   0.37 
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    30   0.37 
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos...    29   1.1  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    28   2.0  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    28   2.0  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    27   4.6  
SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces po...    26   6.1  
SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|c...    26   8.0  

>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 794

 Score = 30.3 bits (65), Expect = 0.37
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +1

Query: 469 SIEIPGSNEPNKTVVISYDICAYGKSPGHSEVTFNVTPPGFVNLDTVY 612
           S+ I G +  + +++ SY +  Y      +  TF  +P GFVN   VY
Sbjct: 197 SLSIDGDDSFHPSLIESYQVGGYDGVSIPTPATFGGSPSGFVNAPLVY 244


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 30.3 bits (65), Expect = 0.37
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +2

Query: 104 YSYCISNFYSNKLYL*LNSVFVFCERAVNRSRWRN 208
           Y +   N YS  ++L +    VFC   VN  RW N
Sbjct: 382 YDHKFRNLYSPNIFLSIVQALVFCGDMVNIQRWYN 416


>SPBC8D2.01 |gsk31||serine/threonine protein kinase
           Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 381

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +3

Query: 597 LRHSIPTYNRHALQR-NKHNIVHNGLDILRGLVSFVLPSNIHKLQ 728
           + HS+P    H L+    HN   N +D+L  ++++V    I  ++
Sbjct: 258 VNHSLPNVRPHTLESVMPHNCTKNAMDLLHKMLTYVPSKRISAIE 302


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 615 TYNRHALQRNKHNIVHNGLDILRGLVSFVLPSNIHKLQ 728
           +Y  H L R +H+I+ N    L+ +  FV  +N   +Q
Sbjct: 539 SYGNHVLNRIQHDILENHFCCLKNVKDFVCGANTISMQ 576


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
 Frame = +3

Query: 522 RYMRVRKES-GTFGSDVQCY---TARFCQLR--HSIPTYNRHAL 635
           RY  VR    GTFG  +QCY   T R C ++   +IP Y   +L
Sbjct: 361 RYTVVRLLGHGTFGKVIQCYDQSTGRHCAIKVTRAIPKYREASL 404


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 21/82 (25%), Positives = 32/82 (39%)
 Frame = +1

Query: 286  IILGIPSAHSQLDKMYVEVTDLNLLVEETRLLKLVQIGQYNTSLEVISNIQHPDIVQLVP 465
            +ILGIPS       +Y  + ++    E T + K         S   ++N   P   +   
Sbjct: 792  LILGIPSLQLVRPDIYDSIREMIASNENTEVEK-----DKLDSFSALANPASPKAPEYTF 846

Query: 466  PSIEIPGSNEPNKTVVISYDIC 531
             SI +P  N PN    I   +C
Sbjct: 847  VSIHVPPLNVPNAEGEIEESVC 868


>SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 432

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +1

Query: 346 DLNLLVEETRLLKLVQIGQYNTSLEVISNIQH 441
           DLNL V   +L  LVQ GQ    L  I  + H
Sbjct: 358 DLNLQVYHEKLRNLVQQGQAAECLNTIKRMSH 389


>SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 521

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +1

Query: 346 DLNLLVEETRLLKLVQIGQYNTSLEVISNIQHPDIVQLVPPSIEI 480
           DL++LV E  L  L  +     + EVI    HPD   L+    +I
Sbjct: 439 DLDILVTEQGLADLRGLSPTERAREVIDKCAHPDYKPLLREYFDI 483


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,481,990
Number of Sequences: 5004
Number of extensions: 74114
Number of successful extensions: 188
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)