Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_M08
(870 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_1021 - 10419383-10419529,10419684-10419733,10419821-104199... 46 5e-05
10_08_0176 + 15432092-15432470,15432592-15432688,15432801-154329... 33 0.39
12_02_0855 + 23703827-23704019,23704465-23704481,23705051-237052... 30 2.1
06_03_0587 + 22555414-22557231 29 3.7
03_02_0462 + 8669049-8669136,8669922-8670046,8670227-8670437,867... 29 3.7
01_06_0880 + 32687018-32687060,32687142-32687219,32687323-326875... 29 6.4
09_04_0609 - 18929600-18929646,18929753-18929924,18930304-189304... 28 8.5
06_02_0215 - 13145544-13146482,13148797-13149297 28 8.5
>12_01_1021 -
10419383-10419529,10419684-10419733,10419821-10419938,
10420498-10420540,10420674-10420825,10420876-10420965,
10422881-10423013,10424397-10424515
Length = 283
Score = 45.6 bits (103), Expect = 5e-05
Identities = 14/32 (43%), Positives = 25/32 (78%)
Frame = +1
Query: 643 INIISYIMGWIYFAAWSVSFYPQIYINFRGKA 738
+ ++ ++GW+ F AWS SFYPQ+++NF+ K+
Sbjct: 9 MEVLYQVLGWVAFFAWSFSFYPQVFLNFKRKS 40
Score = 32.3 bits (70), Expect = 0.52
Identities = 15/24 (62%), Positives = 16/24 (66%)
Frame = +3
Query: 705 PSNIHKLQRKSVVGLNFDFLALTL 776
P +RKSVVGLNFDFL L L
Sbjct: 30 PQVFLNFKRKSVVGLNFDFLVLNL 53
>10_08_0176 +
15432092-15432470,15432592-15432688,15432801-15432985,
15433012-15433056,15433447-15433472,15435299-15435434,
15435608-15435702
Length = 320
Score = 32.7 bits (71), Expect = 0.39
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Frame = +3
Query: 528 MRVRKESGTFGSDVQCYTARFCQLRHSIPTYNRHALQRNKHNIVHNGLDILRGL-VSFVL 704
M+++ SG FG DV+ Y C + + P Y + + ++ L L L SF +
Sbjct: 217 MKLKVSSGEFGLDVEDYLTGLCFMSNDFPRYVVNRVTAGDYDCPRKVLSFLTDLHASFRM 276
Query: 705 PSNIHKLQRKSVVGLNFD 758
+ + RK G+ +D
Sbjct: 277 LNLRNDFLRKKFDGMKYD 294
>12_02_0855 +
23703827-23704019,23704465-23704481,23705051-23705254,
23705486-23705605,23705867-23706472
Length = 379
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = -2
Query: 356 RFRSVTSTYILSNWECALGIPKIIITTKQKRIL*LEIEHAAARGLNTALHS 204
R S T T L +C LG+ +++ + + +EI H+ A GLN L++
Sbjct: 235 RSTSFTETVRLYGEKCGLGVKFLLLVNAVQATVDVEIIHSRACGLNLKLYA 285
>06_03_0587 + 22555414-22557231
Length = 605
Score = 29.5 bits (63), Expect = 3.7
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +3
Query: 549 GTFGSDVQCYTARFCQ--LRHSIPTYNRHALQRNKHNIVHNGL 671
GT G+ VQ R + L SIP RH Q K N+ HN L
Sbjct: 556 GTIGNLVQLNELRLDENNLSGSIPASIRHCTQLTKLNLAHNSL 598
>03_02_0462 +
8669049-8669136,8669922-8670046,8670227-8670437,
8670515-8670752,8671004-8671154,8671353-8671718
Length = 392
Score = 29.5 bits (63), Expect = 3.7
Identities = 10/26 (38%), Positives = 20/26 (76%)
Frame = +1
Query: 400 QYNTSLEVISNIQHPDIVQLVPPSIE 477
++ T + VISN++HP++V+L+ +E
Sbjct: 95 EFLTEINVISNVRHPNLVKLIGCCVE 120
>01_06_0880 +
32687018-32687060,32687142-32687219,32687323-32687532,
32687868-32689744
Length = 735
Score = 28.7 bits (61), Expect = 6.4
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +1
Query: 364 EETRLLKLVQIGQYNTSLEVISNIQHPDIVQLVP 465
EET LLK+V+ NTS SN QH +V+ +P
Sbjct: 606 EETPLLKMVE----NTSSFSFSNEQHSKVVECIP 635
>09_04_0609 -
18929600-18929646,18929753-18929924,18930304-18930498,
18930691-18930801,18930885-18931097,18931643-18931720,
18931894-18932001,18932175-18932316,18932413-18933761,
18934492-18935121
Length = 1014
Score = 28.3 bits (60), Expect = 8.5
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +1
Query: 313 SQLDKMYVEVTDLNLLVEETRLLKLVQIGQYNTSL-EVISNIQHPDIVQLVPPSIEIP 483
+ LD + +LN+ + ++Q Q N + +SN+ H D V ++PP I +P
Sbjct: 322 TMLDSSDFSLKNLNISPDILSSSYVMQQWQKNAPVWNGLSNVVHGDHVPMIPPGINLP 379
>06_02_0215 - 13145544-13146482,13148797-13149297
Length = 479
Score = 28.3 bits (60), Expect = 8.5
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Frame = +1
Query: 205 ECSAVLRPRAAA---CSISSHRIRFCLVVMIILGIPSAHSQLDKMYVEVTDLNLLVEETR 375
+ SAV+R AAA ++ R R+ L ++ G+ + HS ++ ++ NLL+ E
Sbjct: 102 DLSAVVRAAAAARPSALPAAQRKRWML--QVLEGVAACHSA-GVVHRDLKPANLLISEDG 158
Query: 376 LLKLVQIGQ 402
+LK+ +GQ
Sbjct: 159 VLKVADLGQ 167
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,951,952
Number of Sequences: 37544
Number of extensions: 451421
Number of successful extensions: 1087
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1087
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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