Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_M06
         (879 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch...    27   2.7  
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    27   2.7  
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   3.5  
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom...    27   3.5  
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p...    26   8.1  

>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
           Trk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 880

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = +3

Query: 642 KVQSFNSNGTLSAIPLHPLTWVEEMSEGHREDDIVYMPHIALLSIANVVSQQSFF 806
           K++     G     P+ P T  EE    H+E++  +  H  L   AN + + SFF
Sbjct: 146 KIRVLLDQGNQMHRPVAPETKAEEAE--HQENEKHHRHHFRLRKFANAIDRPSFF 198


>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 17/58 (29%), Positives = 31/58 (53%)
 Frame = +3

Query: 159 RRYSADKEMKDLTNNRLKRIEIEKSNIECDFSECEGLNNFEDIDFNEKKDAIINRLFE 332
           R  S  KE + L   + + +E+ +S   C+      L NFE  DFN++K+ +++ + E
Sbjct: 69  RDESKRKEAQFLLQKQ-RCLELARSGAICEAIYV--LQNFESTDFNKEKERLVSIILE 123


>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
 Frame = +3

Query: 147 KVTNRRYSADKEMKDLTNNRLKRIEIEKSNIECDFSECEGLNNFED--IDFNEKKDAIIN 320
           K+  +     K  KDL N  LK  E EKS  E      E   NF +   +F E++ + I 
Sbjct: 225 KMNGKEDDLKKREKDLENRLLKVEEHEKSLNERATKLSEANENFNNRFKEFEEREKSAIK 284

Query: 321 RLFERRKQG 347
           +  E+  +G
Sbjct: 285 QNKEQSSEG 293


>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
 Frame = +3

Query: 129 LVQIWNKVTNRRYSADKEMKDLTNNRL------KRIEIEKSNIECDFSECEGLNNFEDID 290
           L+Q   K+TNR  + +KE+++L+ ++       +R+E E+  ++    + +   +  D D
Sbjct: 269 LIQDQEKITNRLSTIEKELEELSKDQTADQAISRRLERERDELDLRLLDIQNKLSEMDSD 328

Query: 291 FNEKKDAII 317
             E + A I
Sbjct: 329 RAESRAATI 337


>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 555

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -3

Query: 613 GPTSWSLIFSSFPARYSSELVTLNRKTLV*SWTSGFLHISKISP 482
           GP  W ++  +FP RY S+  ++       +W   F+ IS  +P
Sbjct: 384 GPMGWVIVGETFPIRYRSKCASVATSG---NWLGNFM-ISFFTP 423


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,507,392
Number of Sequences: 5004
Number of extensions: 73899
Number of successful extensions: 252
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)