Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_M06
(879 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_1152 - 10837540-10839549 33 0.30
10_08_0001 + 13984436-13984514,13984804-13984926,13985181-139854... 31 0.92
03_05_0874 - 28429982-28430083,28430284-28430472,28430585-284306... 31 1.2
03_06_0709 - 35670153-35670350,35671206-35671259,35672444-356725... 29 3.7
03_02_0865 - 11895257-11895340,11896004-11896069,11896297-118963... 29 3.7
09_02_0322 - 7240125-7241568,7242043-7243253,7245782-7246144,724... 29 4.9
02_02_0641 + 12566416-12566599,12567132-12567327,12568319-125684... 29 6.5
12_02_0953 - 24736642-24736673,24737104-24737188,24737267-247373... 28 8.6
09_02_0393 + 8510089-8510274,8510450-8510806,8510889-8511011,851... 28 8.6
01_05_0198 + 19170217-19171701 28 8.6
>07_01_1152 - 10837540-10839549
Length = 669
Score = 33.1 bits (72), Expect = 0.30
Identities = 19/56 (33%), Positives = 30/56 (53%)
Frame = -2
Query: 731 SVALGHLFHPSQRMQGNRRQRTVRVEALNFVFQSLSVHVRPDFLELNFLILPSQVL 564
++ LGH F+P+ + TV+ +L+FVF LSVH + F + PS+ L
Sbjct: 61 TINLGHAFYPTPQNFRKFSNSTVQSFSLSFVFAILSVHDDISADGMAFFVAPSKNL 116
>10_08_0001 +
13984436-13984514,13984804-13984926,13985181-13985468,
13985560-13985690,13985764-13985979,13986059-13986442
Length = 406
Score = 31.5 bits (68), Expect = 0.92
Identities = 16/64 (25%), Positives = 30/64 (46%)
Frame = +3
Query: 363 PKCLFILLMLGFIALSIGCFILFVKPYNFLFNQKVLLQDGGEIFEMWRKPEVQLYTRVFL 542
P+ ++ L + GCF ++ +P F Q++ +D G MWR +YT ++
Sbjct: 259 PRWTIVMANLFAVIQITGCFQIYCRPTFAQFEQRIQAKDAGYRARMWR----LVYTSAYM 314
Query: 543 FNVT 554
+T
Sbjct: 315 VVIT 318
>03_05_0874 -
28429982-28430083,28430284-28430472,28430585-28430655,
28430754-28431021,28432579-28432818,28433791-28433979
Length = 352
Score = 31.1 bits (67), Expect = 1.2
Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Frame = +3
Query: 459 QKVL--LQDGGEI-FEMWRKPEVQLYTRVFLFNVTNSEEYLAGKDEKIKLQE--VGPYVY 623
QK L L D G+I F+ + K ++ L R FN+ N EE K IKLQE
Sbjct: 168 QKALDALADSGQISFKEYGKQKIYL-ARQDQFNIPNGEELEEMKKANIKLQEELADQKKA 226
Query: 624 REALEHKVQSFNSNGTLSAI 683
+E +V+ SN TL+ I
Sbjct: 227 ISEVESEVRGLQSNLTLAEI 246
>03_06_0709 -
35670153-35670350,35671206-35671259,35672444-35672527,
35672688-35672902,35673959-35674058,35674178-35674276
Length = 249
Score = 29.5 bits (63), Expect = 3.7
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +3
Query: 399 IALSIGCFILFVKPYNFLFNQKVLLQDGGEIFEMWRKPEVQLYTR 533
+ ++GC + + PY+ N K+++Q +E+WR LY R
Sbjct: 24 VVTTVGCTLEIISPYHLYLNPKLVVQH----YEIWRLVTNFLYFR 64
>03_02_0865 -
11895257-11895340,11896004-11896069,11896297-11896355,
11896470-11896557,11897158-11897328,11897406-11897564,
11897653-11897835,11897931-11898012,11898753-11898959,
11899099-11899170,11901948-11902055,11902460-11902506
Length = 441
Score = 29.5 bits (63), Expect = 3.7
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -2
Query: 557 ISHVEQKDPRIKLDFRFPPHLE 492
IS E PR+ +D+ FPPHLE
Sbjct: 124 ISSAEPIAPRLGVDYPFPPHLE 145
>09_02_0322 -
7240125-7241568,7242043-7243253,7245782-7246144,
7246502-7246522
Length = 1012
Score = 29.1 bits (62), Expect = 4.9
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Frame = +2
Query: 611 ALRVQRGFGTQSSKLQLERYVVGDSPASSDLGGR------DVRGPQRGRHRIYAAHSSTE 772
A+R +G + + +++E + GD +SS + R R +RGR++ + ST+
Sbjct: 107 AVRELQGIHLRGAPIRIE-FSKGDKGSSSSMDDRYSQHADQRRFTERGRNQQSSPEKSTD 165
Query: 773 HCKRSLPAE 799
KRS PAE
Sbjct: 166 KSKRSRPAE 174
>02_02_0641 +
12566416-12566599,12567132-12567327,12568319-12568406,
12569279-12569330,12569423-12569765,12571282-12571684,
12571770-12571841,12572632-12572817,12573174-12573239,
12574802-12575174,12575917-12576014,12578179-12578305,
12578734-12578924,12579265-12579540,12579837-12579866
Length = 894
Score = 28.7 bits (61), Expect = 6.5
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +3
Query: 153 TNRRYSADKEMKDLTNNRLKRIEIEKSNIEC-DFSECEGLNNFEDIDFNEKKDAIIN 320
TN Y + + K+L N +RIEI K +EC + + + L E + + K D I+
Sbjct: 348 TNSLYLS-RYAKNLNMNSYQRIEITKPKLECNEETNIDALQEDETLSVDYKNDVSIH 403
>12_02_0953 - 24736642-24736673,24737104-24737188,24737267-24737386,
24737484-24737549,24737629-24737799,24737901-24737999,
24738075-24738186,24738282-24738343,24738412-24738483,
24738583-24738681,24738764-24738997,24739104-24739178,
24739299-24739386,24739478-24739638,24739734-24739841,
24739934-24741922,24742007-24742279,24742957-24743295,
24743449-24745038,24745166-24745241,24745333-24745412,
24745614-24745679,24745761-24745830,24745899-24746134,
24746149-24746319,24746915-24747097,24747176-24747241,
24747326-24747389,24747472-24747530,24747612-24747699,
24747799-24747891,24747956-24748116,24748215-24748307,
24748405-24748518,24748654-24748773,24748852-24748935,
24749016-24749171,24749518-24750154,24752874-24752929
Length = 2815
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +3
Query: 153 TNRRYSADKEMKDLTNNRLKRIEIEKSNIECDFSECEGLNNFEDIDFNEKKDAI 314
+N++ SA +E N LK + +EK + + EG++ + + +K AI
Sbjct: 2167 SNQKVSALEEQLASKINELKEVSVEKDELTSKLNHIEGISYTMEDELADKSKAI 2220
>09_02_0393 +
8510089-8510274,8510450-8510806,8510889-8511011,
8511209-8511523,8511576-8511682,8512559-8512629,
8512952-8513029,8513390-8513454,8514224-8514274,
8514373-8514414,8514785-8515105,8515154-8517880
Length = 1480
Score = 28.3 bits (60), Expect = 8.6
Identities = 10/35 (28%), Positives = 23/35 (65%)
Frame = +2
Query: 71 RVDVFCKIKVN*KKKQHERLSSNLEQSDESKVFGG 175
R++++C++ + ++H+ +SS L+ + K FGG
Sbjct: 221 RINIYCQVYHEERGEEHQPVSSELDGNVVYKAFGG 255
>01_05_0198 + 19170217-19171701
Length = 494
Score = 28.3 bits (60), Expect = 8.6
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -1
Query: 780 LQCSVELCAAYIRCRPLCGPR 718
++CS + A+ +R RPLCG R
Sbjct: 280 VECSQAMLASLLRARPLCGER 300
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,456,247
Number of Sequences: 37544
Number of extensions: 474472
Number of successful extensions: 1398
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1398
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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