Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_M06
(879 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D12676-1|BAA02177.1| 478|Homo sapiens 85kDa lysosomal sialoglyc... 80 1e-14
BT006939-1|AAP35585.1| 478|Homo sapiens scavenger receptor clas... 80 1e-14
BC021892-1|AAH21892.1| 478|Homo sapiens scavenger receptor clas... 80 1e-14
Z22555-1|CAA80277.1| 509|Homo sapiens CLA-1 protein. 66 2e-10
BC112037-1|AAI12038.1| 509|Homo sapiens scavenger receptor clas... 64 5e-10
BC093732-1|AAH93732.1| 509|Homo sapiens scavenger receptor clas... 64 5e-10
BC080647-1|AAH80647.1| 509|Homo sapiens scavenger receptor clas... 64 5e-10
AB209436-1|BAD92673.1| 581|Homo sapiens Scavenger receptor clas... 64 5e-10
AF515445-1|AAQ08185.1| 474|Homo sapiens scavenger receptor clas... 61 4e-09
>D12676-1|BAA02177.1| 478|Homo sapiens 85kDa lysosomal
sialoglycoprotein protein.
Length = 478
Score = 79.8 bits (188), Expect = 1e-14
Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
Frame = +3
Query: 372 LFILLMLGFIALSIGCFILFVKPYNFLFNQKVLLQDGGEIFEMWRKPEVQLYTRVFLFNV 551
L +LL++ + L + +F K + +K++L++G E F+ W KP + +YT+ + FNV
Sbjct: 12 LSLLLLVTSVTLLVAR--VFQKAVDQSIEKKIVLRNGTEAFDSWEKPPLPVYTQFYFFNV 69
Query: 552 TNSEEYLAGKDEKIKLQEVGPYVYREALEHKVQSFNSNG-TLSAIPLHPLTWVEEMSEGH 728
TN EE L G E +++EVGPY YRE F NG T+SA+ + + S G
Sbjct: 70 TNPEEILRG--ETPRVEEVGPYTYRELRNKANIQFGDNGTTISAVSNKAYVFERDQSVGD 127
Query: 729 REDDIVYMPHIALLSI 776
+ D++ +I +L++
Sbjct: 128 PKIDLIRTLNIPVLTV 143
>BT006939-1|AAP35585.1| 478|Homo sapiens scavenger receptor class
B, member 2 protein.
Length = 478
Score = 79.8 bits (188), Expect = 1e-14
Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
Frame = +3
Query: 372 LFILLMLGFIALSIGCFILFVKPYNFLFNQKVLLQDGGEIFEMWRKPEVQLYTRVFLFNV 551
L +LL++ + L + +F K + +K++L++G E F+ W KP + +YT+ + FNV
Sbjct: 12 LSLLLLVTSVTLLVAR--VFQKAVDQSIEKKIVLRNGTEAFDSWEKPPLPVYTQFYFFNV 69
Query: 552 TNSEEYLAGKDEKIKLQEVGPYVYREALEHKVQSFNSNG-TLSAIPLHPLTWVEEMSEGH 728
TN EE L G E +++EVGPY YRE F NG T+SA+ + + S G
Sbjct: 70 TNPEEILRG--ETPRVEEVGPYTYRELRNKANIQFGDNGTTISAVSNKAYVFERDQSVGD 127
Query: 729 REDDIVYMPHIALLSI 776
+ D++ +I +L++
Sbjct: 128 PKIDLIRTLNIPVLTV 143
>BC021892-1|AAH21892.1| 478|Homo sapiens scavenger receptor class
B, member 2 protein.
Length = 478
Score = 79.8 bits (188), Expect = 1e-14
Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
Frame = +3
Query: 372 LFILLMLGFIALSIGCFILFVKPYNFLFNQKVLLQDGGEIFEMWRKPEVQLYTRVFLFNV 551
L +LL++ + L + +F K + +K++L++G E F+ W KP + +YT+ + FNV
Sbjct: 12 LSLLLLVTSVTLLVAR--VFQKAVDQSIEKKIVLRNGTEAFDSWEKPPLPVYTQFYFFNV 69
Query: 552 TNSEEYLAGKDEKIKLQEVGPYVYREALEHKVQSFNSNG-TLSAIPLHPLTWVEEMSEGH 728
TN EE L G E +++EVGPY YRE F NG T+SA+ + + S G
Sbjct: 70 TNPEEILRG--ETPRVEEVGPYTYRELRNKANIQFGDNGTTISAVSNKAYVFERDQSVGD 127
Query: 729 REDDIVYMPHIALLSI 776
+ D++ +I +L++
Sbjct: 128 PKIDLIRTLNIPVLTV 143
>Z22555-1|CAA80277.1| 509|Homo sapiens CLA-1 protein.
Length = 509
Score = 65.7 bits (153), Expect = 2e-10
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 4/133 (3%)
Frame = +3
Query: 393 GFIALSIGCFILFVKPYNFLFNQKVL----LQDGGEIFEMWRKPEVQLYTRVFLFNVTNS 560
G + +G ++ + P L Q+VL + F MW++ + Y V+ F+V N
Sbjct: 18 GLLCAVLGAVMIVMVPS--LIKQQVLKNVRIDPSSLSFNMWKEIPIPFYLSVYFFDVMNP 75
Query: 561 EEYLAGKDEKIKLQEVGPYVYREALEHKVQSFNSNGTLSAIPLHPLTWVEEMSEGHREDD 740
E L G EK +++E GPYVYRE+ +FN+N T+S + + S G E D
Sbjct: 76 SEILKG--EKPQVRERGPYVYRESRHKSNITFNNNDTVSFLEYRTFQFQPSKSHG-SESD 132
Query: 741 IVYMPHIALLSIA 779
+ MP+I +L A
Sbjct: 133 YIVMPNILVLGAA 145
>BC112037-1|AAI12038.1| 509|Homo sapiens scavenger receptor class
B, member 1 protein.
Length = 509
Score = 64.5 bits (150), Expect = 5e-10
Identities = 42/133 (31%), Positives = 65/133 (48%), Gaps = 4/133 (3%)
Frame = +3
Query: 393 GFIALSIGCFILFVKPYNFLFNQKVL----LQDGGEIFEMWRKPEVQLYTRVFLFNVTNS 560
G + +G ++ + P L Q+VL + F MW++ + Y V+ F+V N
Sbjct: 18 GLLCAVLGAVMIVMVPS--LIKQQVLKNVRIDPSSLSFNMWKEIPIPFYLSVYFFDVMNP 75
Query: 561 EEYLAGKDEKIKLQEVGPYVYREALEHKVQSFNSNGTLSAIPLHPLTWVEEMSEGHREDD 740
E L G EK +++E GPYVYRE +FN+N T+S + + S G E D
Sbjct: 76 SEILKG--EKPQVRERGPYVYREFRHKSNITFNNNDTVSFLEYRTFQFQPSKSHG-SESD 132
Query: 741 IVYMPHIALLSIA 779
+ MP+I +L A
Sbjct: 133 YIVMPNILVLGAA 145
>BC093732-1|AAH93732.1| 509|Homo sapiens scavenger receptor class
B, member 1 protein.
Length = 509
Score = 64.5 bits (150), Expect = 5e-10
Identities = 42/133 (31%), Positives = 65/133 (48%), Gaps = 4/133 (3%)
Frame = +3
Query: 393 GFIALSIGCFILFVKPYNFLFNQKVL----LQDGGEIFEMWRKPEVQLYTRVFLFNVTNS 560
G + +G ++ + P L Q+VL + F MW++ + Y V+ F+V N
Sbjct: 18 GLLCAVLGAVMIVMVPS--LIKQQVLKNVRIDPSSLSFNMWKEIPIPFYLSVYFFDVMNP 75
Query: 561 EEYLAGKDEKIKLQEVGPYVYREALEHKVQSFNSNGTLSAIPLHPLTWVEEMSEGHREDD 740
E L G EK +++E GPYVYRE +FN+N T+S + + S G E D
Sbjct: 76 SEILKG--EKPQVRERGPYVYREFRHKSNITFNNNDTVSFLEYRTFQFQPSKSHG-SESD 132
Query: 741 IVYMPHIALLSIA 779
+ MP+I +L A
Sbjct: 133 YIVMPNILVLGAA 145
>BC080647-1|AAH80647.1| 509|Homo sapiens scavenger receptor class
B, member 1 protein.
Length = 509
Score = 64.5 bits (150), Expect = 5e-10
Identities = 42/133 (31%), Positives = 65/133 (48%), Gaps = 4/133 (3%)
Frame = +3
Query: 393 GFIALSIGCFILFVKPYNFLFNQKVL----LQDGGEIFEMWRKPEVQLYTRVFLFNVTNS 560
G + +G ++ + P L Q+VL + F MW++ + Y V+ F+V N
Sbjct: 18 GLLCAVLGAVMIVMVPS--LIKQQVLKNVRIDPSSLSFNMWKEIPIPFYLSVYFFDVMNP 75
Query: 561 EEYLAGKDEKIKLQEVGPYVYREALEHKVQSFNSNGTLSAIPLHPLTWVEEMSEGHREDD 740
E L G EK +++E GPYVYRE +FN+N T+S + + S G E D
Sbjct: 76 SEILKG--EKPQVRERGPYVYREFRHKSNITFNNNDTVSFLEYRTFQFQPSKSHG-SESD 132
Query: 741 IVYMPHIALLSIA 779
+ MP+I +L A
Sbjct: 133 YIVMPNILVLGAA 145
>AB209436-1|BAD92673.1| 581|Homo sapiens Scavenger receptor class B
member 1 variant protein.
Length = 581
Score = 64.5 bits (150), Expect = 5e-10
Identities = 42/133 (31%), Positives = 65/133 (48%), Gaps = 4/133 (3%)
Frame = +3
Query: 393 GFIALSIGCFILFVKPYNFLFNQKVL----LQDGGEIFEMWRKPEVQLYTRVFLFNVTNS 560
G + +G ++ + P L Q+VL + F MW++ + Y V+ F+V N
Sbjct: 46 GLLCAVLGAVMIVMVPS--LIKQQVLKNVRIDPSSLSFNMWKEIPIPFYLSVYFFDVMNP 103
Query: 561 EEYLAGKDEKIKLQEVGPYVYREALEHKVQSFNSNGTLSAIPLHPLTWVEEMSEGHREDD 740
E L G EK +++E GPYVYRE +FN+N T+S + + S G E D
Sbjct: 104 SEILKG--EKPQVRERGPYVYREFRHKSNITFNNNDTVSFLEYRTFQFQPSKSHG-SESD 160
Query: 741 IVYMPHIALLSIA 779
+ MP+I +L A
Sbjct: 161 YIVMPNILVLGAA 173
>AF515445-1|AAQ08185.1| 474|Homo sapiens scavenger receptor class B
type III protein.
Length = 474
Score = 61.3 bits (142), Expect = 4e-09
Identities = 34/96 (35%), Positives = 50/96 (52%)
Frame = +3
Query: 492 FEMWRKPEVQLYTRVFLFNVTNSEEYLAGKDEKIKLQEVGPYVYREALEHKVQSFNSNGT 671
F MW++ + Y V+ +V N E L G EK +++E GPYVYRE +FN+N T
Sbjct: 18 FNMWKEIPIPFYLSVYFLDVMNPSEILKG--EKPQVRERGPYVYREFRHKSNITFNNNDT 75
Query: 672 LSAIPLHPLTWVEEMSEGHREDDIVYMPHIALLSIA 779
+S + + S G E D + MP+I +L A
Sbjct: 76 VSFLEYRTFQFQPSKSHG-SESDYIVMPNILVLGAA 110
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,248,606
Number of Sequences: 237096
Number of extensions: 2574984
Number of successful extensions: 6133
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6129
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11215125244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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