Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_M06
         (879 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98866-17|CAB11566.3|  534|Caenorhabditis elegans Hypothetical p...    49   4e-06
Z54270-3|CAA91027.2|  560|Caenorhabditis elegans Hypothetical pr...    43   3e-04
Z48621-2|CAA88547.1|  536|Caenorhabditis elegans Hypothetical pr...    39   0.005
Z72506-4|CAA96619.1|  590|Caenorhabditis elegans Hypothetical pr...    30   2.5  
Z67734-1|CAA91527.2|  279|Caenorhabditis elegans Hypothetical pr...    27   3.2  
Z49911-6|CAA90132.1|  831|Caenorhabditis elegans Hypothetical pr...    29   4.4  
AF106592-5|AAK21368.1|  525|Caenorhabditis elegans Hypothetical ...    29   4.4  
U64833-6|AAK95861.1|  350|Caenorhabditis elegans Hypothetical pr...    29   5.8  

>Z98866-17|CAB11566.3|  534|Caenorhabditis elegans Hypothetical
           protein Y49E10.20 protein.
          Length = 534

 Score = 49.2 bits (112), Expect = 4e-06
 Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 14/119 (11%)
 Frame = +3

Query: 357 RQPKCLF-ILLMLGFIALSIGCFILFVKPYNFLFNQKVLLQD---------GGEI----F 494
           ++  CLF   ++LG +  + G  +L   P + + N++V+ QD         G E+     
Sbjct: 3   KKAPCLFGSAIILGLLLAAAGVLLLIGIPIDRIVNRQVIDQDFLGYTRDENGTEVPNAMT 62

Query: 495 EMWRKPEVQLYTRVFLFNVTNSEEYLAGKDEKIKLQEVGPYVYREALEHKVQSFNSNGT 671
           + W KP   +   +++FNVTN +  L  + EK  L E+GP+V+ E  E     F  N T
Sbjct: 63  KSWLKPLYAMQLNIWMFNVTNVDGILK-RHEKPNLHEIGPFVFDEVQEKVYHRFADNDT 120


>Z54270-3|CAA91027.2|  560|Caenorhabditis elegans Hypothetical
           protein F11C1.3 protein.
          Length = 560

 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 50/179 (27%), Positives = 77/179 (43%), Gaps = 17/179 (9%)
 Frame = +3

Query: 372 LFILLMLGFIAL---SIGCFILFVKP---YNFLFNQKVLLQD--GGEIFE---MWRK-PE 515
           LF+ ++L  + L   ++G F+L   P   +  + + +V LQ    G++      W K P 
Sbjct: 3   LFVAIILAAVILLVFALGIFLLIPFPIAIFQSIVDSQVYLQQKSDGQLPTGTFYWSKIPA 62

Query: 516 VQLYTRVFLFNVTNSEEYLAGKDEKIKLQEVGPYVYREALEHKVQSFNSNGTLSAIPLHP 695
           VQ++T   LFNVTN +E L        + E+GPY Y E        F  N       ++ 
Sbjct: 63  VQIWT-FHLFNVTNPDEVLY-YGATPNMLEIGPYTYTETEFKDFTQFRDNDN-EIFYVNN 119

Query: 696 LTWVEEMS---EGHREDDIVYMPHIALLS--IANVVSQQSFFTRFGLNNLITLTNSQPL 857
            TWV + +   E  +  D V   + A +S     +         FGL+ L  L   QPL
Sbjct: 120 KTWVYDPTRSCEDCKLSDSVQFANTAYMSTVFMQIYQPAGPIVGFGLDVLTILLGEQPL 178


>Z48621-2|CAA88547.1|  536|Caenorhabditis elegans Hypothetical
           protein R07B1.3 protein.
          Length = 536

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 8/126 (6%)
 Frame = +3

Query: 456 NQKVLLQDGGEIFE---MWRKPEVQLYTRVFLFNVTNSEE--YLAGKDEKIKLQEVGPYV 620
           N K+   D G +     ++  P ++   +  LFNVTN +E  YL  K E I   EVG Y 
Sbjct: 40  NYKLGANDDGSLHYAAFLYANPPMKNVMKFNLFNVTNPDEVKYLGAKPELI---EVGGYA 96

Query: 621 YREALEHKVQSFNSNGTLSAIPLHPLTWVEEMSE--GHREDDIVYMPH-IALLSIANVVS 791
           + E+ + K   F+S+ T      +      E+    G+  +D +  P+ IA  +++ V  
Sbjct: 97  FLESEQKKYYEFSSDKTKMFYQNYKQYHYSEVDNDAGYNYNDKIMFPNSIAEGAVSTVFG 156

Query: 792 QQSFFT 809
            QS F+
Sbjct: 157 PQSEFS 162


>Z72506-4|CAA96619.1|  590|Caenorhabditis elegans Hypothetical
           protein F07A5.3 protein.
          Length = 590

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 5/101 (4%)
 Frame = +3

Query: 378 ILLMLGFIALSIGCFILFVKPYNFLFNQKVLLQDG-----GEIFEMWRKPEVQLYTRVFL 542
           +++ + FI   I  +  F   Y+ L  + + L +      G     +  P+V    + + 
Sbjct: 15  VVIAIVFIVFGIVTWAAFSSIYSTLVIKNLQLTENSDTSLGYSAFQYTSPQVDNIMKFYF 74

Query: 543 FNVTNSEEYLAGKDEKIKLQEVGPYVYREALEHKVQSFNSN 665
           FNVTN +E +        L E+GP+   E+ + K   F+ +
Sbjct: 75  FNVTNPDE-VKYYSAAPNLVEIGPFSVMESEQKKYLEFSDD 114


>Z67734-1|CAA91527.2|  279|Caenorhabditis elegans Hypothetical
           protein B0198.1 protein.
          Length = 279

 Score = 26.6 bits (56), Expect(2) = 3.2
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 351 VARQPKCLFILLMLGFIALSIGCFILFVKPYNFLFNQKV 467
           V+ +   +F LLML F  +  GC I F   Y+  + Q++
Sbjct: 90  VSNRCALVFYLLMLIFSMIMEGCLIYFTFSYHATYEQEL 128



 Score = 21.4 bits (43), Expect(2) = 3.2
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = +3

Query: 480 GGEIFEMWRKPEVQLYTRVFLFNVTNSEEYL 572
           G   F  W KPEV+ +   +   V    +Y+
Sbjct: 161 GSNAFNDWPKPEVEDHYLPYAKTVVQRVQYI 191


>Z49911-6|CAA90132.1|  831|Caenorhabditis elegans Hypothetical
           protein M28.8 protein.
          Length = 831

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 586 RKLSSRKSGLTCTERLWNTKFKASTRTVRCRRFP 687
           RKL  +K  +  TE LW T   +ST     R+ P
Sbjct: 719 RKLGGKKDQVRPTEELWATPILSSTSNTETRQLP 752


>AF106592-5|AAK21368.1|  525|Caenorhabditis elegans Hypothetical
           protein D1037.5 protein.
          Length = 525

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -2

Query: 515 FRFPPHLEDFAPILQKDFLIKQKVVWLHEQYKASY 411
           FRF PHL     + + D     +V+W  EQY AS+
Sbjct: 435 FRFSPHLSQGISLDEIDLEKVMQVMWETEQYVASH 469


>U64833-6|AAK95861.1|  350|Caenorhabditis elegans Hypothetical
           protein B0507.8 protein.
          Length = 350

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +3

Query: 171 ADKEMKDLTNNRLKRIEIEKSNIECDFSECEGLNNFEDI--DFNEKKDAIINRLFERRKQ 344
           A+ E K   + R  +IE+E+++ + D      LN+FED    FNEK   +   + E + +
Sbjct: 24  AEHEQKKEESIRNAQIEVEQNSKKIDVLTSIALNHFEDATSKFNEKNLHLDKEIAEGKAR 83

Query: 345 GQV 353
             +
Sbjct: 84  SMI 86


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,318,313
Number of Sequences: 27780
Number of extensions: 416712
Number of successful extensions: 1319
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1317
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)