Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_M04
         (910 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ...    53   9e-06
UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular organi...    49   2e-04
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    46   0.001
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ...    39   0.20 
UniRef50_Q4RMS4 Cluster: Chromosome 3 SCAF15018, whole genome sh...    34   4.4  

>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
           root|Rep: Putative uncharacterized protein - Salmonella
           typhimurium
          Length = 127

 Score = 53.2 bits (122), Expect = 9e-06
 Identities = 31/48 (64%), Positives = 33/48 (68%)
 Frame = +1

Query: 610 GTXKRPRCWRXSIGSAPPTSITKIXPQVXXGETPQDYKDTXVSPGKXP 753
           GT +R RC R SIGSAP TSITKI  QV  GET QDYKDT   P + P
Sbjct: 8   GTSQR-RC-RFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAP 53


>UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular
           organisms|Rep: Predicted protein - Nematostella
           vectensis
          Length = 97

 Score = 48.8 bits (111), Expect = 2e-04
 Identities = 26/43 (60%), Positives = 27/43 (62%)
 Frame = +1

Query: 625 PRCWRXSIGSAPPTSITKIXPQVXXGETPQDYKDTXVSPGKXP 753
           PR  R SIGSAP TSITK   Q+  GET QDYKDT   P   P
Sbjct: 47  PRQSRFSIGSAPLTSITKSDAQISGGETRQDYKDTRRFPLAAP 89


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 46.0 bits (104), Expect = 0.001
 Identities = 23/35 (65%), Positives = 24/35 (68%)
 Frame = +1

Query: 622 RPRCWRXSIGSAPPTSITKIXPQVXXGETPQDYKD 726
           RPR  R SIGSAP TSI K   Q+  GET QDYKD
Sbjct: 78  RPRRSRFSIGSAPLTSIAKSDAQISGGETRQDYKD 112


>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
           root|Rep: Putative uncharacterized protein - Escherichia
           coli
          Length = 61

 Score = 38.7 bits (86), Expect = 0.20
 Identities = 29/64 (45%), Positives = 30/64 (46%)
 Frame = -3

Query: 671 MLVGGAEPMEXRQXRGLFXVPGLXLAXCSHVLSCVIP*LXXXTVXPPXSXXXPLXXAERP 492
           MLV GAEPME R    L  V    L  CS  L    P +   TV PP S   PL   ERP
Sbjct: 1   MLVRGAEPMEKRLRCWLLPVLCFLLT-CSFRL---YPLILWITVLPPLSELTPLAAVERP 56

Query: 491 XAAS 480
             AS
Sbjct: 57  SVAS 60


>UniRef50_Q4RMS4 Cluster: Chromosome 3 SCAF15018, whole genome
           shotgun sequence; n=2; Tetraodontidae|Rep: Chromosome 3
           SCAF15018, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 754

 Score = 34.3 bits (75), Expect = 4.4
 Identities = 26/114 (22%), Positives = 39/114 (34%)
 Frame = +1

Query: 403 ALMNXPTRGXRXXAXWXRXRVAXGHGLAAXGRSAXXSGIXXLXGGXTVXXXSQGITQERT 582
           AL   P         W R        ++  G     +G+    GG  V    QGI+ ERT
Sbjct: 568 ALDTPPPSQAPSAGGWGRYSSLLESSVSVPGTLNEAAGLEAFGGGHGVPGELQGIS-ERT 626

Query: 583 CEQXASXRPGTXKRPRCWRXSIGSAPPTSITKIXPQVXXGETPQDYKDTXVSPG 744
             +    +P     PR W  S+   P   +     ++  G+      DT +  G
Sbjct: 627 LLELTRGKP-LLSHPRAWFVSLDGKPAAQVRHSIIELQGGQRRPSSNDTSLDSG 679


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 530,716,835
Number of Sequences: 1657284
Number of extensions: 6810881
Number of successful extensions: 10730
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10685
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 82801539422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)