Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_M03
(895 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces pombe... 184 2e-47
SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase |Schizosaccharo... 173 2e-44
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe... 77 3e-15
SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces ... 26 6.3
SPAC6F6.11c |||pyridoxine-pyridoxal-pyridoxamine kinase |Schizos... 26 8.3
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc... 26 8.3
SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 26 8.3
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p... 26 8.3
>SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 405
Score = 184 bits (447), Expect = 2e-47
Identities = 95/221 (42%), Positives = 132/221 (59%), Gaps = 2/221 (0%)
Frame = +1
Query: 226 RVAYLWDEKLVKECI--RLPAVFGRARLVHNLIEAYGLISKLKVIRSSPASYEDLNVFHS 399
+V+Y +DE + + P R R+VHNL+ Y L KL VI A+ D+ H+
Sbjct: 7 KVSYFYDEDVGNYHYGPQHPMKPHRVRMVHNLVVNYNLYEKLNVITPVRATRNDMTRCHT 66
Query: 400 DLYLEHLKQITDIDDDYISNAQDENFGIGYDCPPVPNMFELVSTIAGGSVTAAKCLTMGI 579
D Y+E L ++T + Q + F +G DCP ++E S AGGS+ AA+ L G
Sbjct: 67 DEYIEFLWRVTPDTMEKFQPHQLK-FNVGDDCPVFDGLYEFCSISAGGSIGAAQELNSGN 125
Query: 580 ADIAINWCGGWHHAHNNRAEGFCYVNDIVIAIEKLKGKFKNILYVDLDVHHGNGVQDAYW 759
A+IAINW GG HHA A GFCYVNDI +A +L + +LY+D+DVHHG+GV++ ++
Sbjct: 126 AEIAINWAGGLHHAKKREASGFCYVNDIALAALELLKYHQRVLYIDIDVHHGDGVEEFFY 185
Query: 760 TTRSVYTLSFHKFEPGFYPGTGSIEDIGCGDGEGYSCNFPL 882
TT V T SFHKF ++PGTG I+D G G G+ Y+ N PL
Sbjct: 186 TTDRVMTCSFHKFGE-YFPGTGHIKDTGIGTGKNYAVNVPL 225
>SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 173 bits (422), Expect = 2e-44
Identities = 86/229 (37%), Positives = 133/229 (58%), Gaps = 2/229 (0%)
Frame = +1
Query: 202 FRFIMNNARVAYLWDEKLVKECI--RLPAVFGRARLVHNLIEAYGLISKLKVIRSSPASY 375
F F RV Y DE++ + P R + ++L+ YGL +K+ V A++
Sbjct: 19 FSFRPQKKRVTYHLDEQVGNYHYGDKHPMKPHRITITNHLVMGYGLHNKMSVFSPRMATF 78
Query: 376 EDLNVFHSDLYLEHLKQITDIDDDYISNAQDENFGIGYDCPPVPNMFELVSTIAGGSVTA 555
+++ FH + YL+ LK++T + + ++ + + F IG DCP +E AG S+ A
Sbjct: 79 GEMSEFHREDYLDFLKRVTPDNAEQFAD-KFQQFNIGDDCPVFDGTYEFSQRSAGASLDA 137
Query: 556 AKCLTMGIADIAINWCGGWHHAHNNRAEGFCYVNDIVIAIEKLKGKFKNILYVDLDVHHG 735
++ L G DIAINW GG HHA A GFCYVNDIV+AI + F +LY+D+D+HHG
Sbjct: 138 SRKLVQGQTDIAINWSGGLHHAKRGEASGFCYVNDIVLAILNMLRFFPRVLYIDIDIHHG 197
Query: 736 NGVQDAYWTTRSVYTLSFHKFEPGFYPGTGSIEDIGCGDGEGYSCNFPL 882
+GVQ A++ + V T+SFHK+ F+P TG+ ++ G G+ ++ N PL
Sbjct: 198 DGVQQAFYESDRVLTVSFHKYNGDFFPATGNFDENGVKGGKYFALNVPL 246
>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 687
Score = 77.0 bits (181), Expect = 3e-15
Identities = 38/96 (39%), Positives = 56/96 (58%), Gaps = 7/96 (7%)
Frame = +1
Query: 613 HHAHNNRAEGFCYVNDIVIA----IEKLKGKFKNILYVDLDVHHGNGVQDAYWTTRSVYT 780
HHA ++ GFC N++ + +++ K K +L VD D+HHGNG Q A++ +V
Sbjct: 194 HHAEPHKPGGFCLFNNVSVTARSMLQRFPDKIKRVLIVDWDIHHGNGTQMAFYDDPNVLY 253
Query: 781 LSFHKFEPG-FYPGT--GSIEDIGCGDGEGYSCNFP 879
+S H++E G FYPGT G E+ G G G G + N P
Sbjct: 254 VSLHRYENGRFYPGTNYGCAENCGEGPGLGRTVNIP 289
>SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 601
Score = 26.2 bits (55), Expect = 6.3
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Frame = +1
Query: 607 GWHHAHNNRAE---GFCYVNDIVIAIEKLKG-KFKNILYVDL-DVHHGNGVQDAYWTTRS 771
GW + H A F V+ +++L K ++L VD D+H GNG+ DA
Sbjct: 58 GWLNGHLRDARYKADFGEFKSFVLRMKELADFKDVDLLLVDTGDLHDGNGLSDAS-DPEG 116
Query: 772 VYTLSFHKFEP 804
+YT + + P
Sbjct: 117 IYTNNIFTYLP 127
>SPAC6F6.11c |||pyridoxine-pyridoxal-pyridoxamine kinase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 25.8 bits (54), Expect = 8.3
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = +1
Query: 673 IEKLKGKFK-NILYVDLDVHHGNGVQDAYWTTRSVYTLSFH---KFEPGFYPGTGSI 831
+E L+ K+K + + V NGV+ Y S+Y+ SF PG + GTG +
Sbjct: 167 VECLQQKYKVPRVVISSFVVEENGVEKLYCIGSSIYSKSFFVLIPVIPGIFRGTGDL 223
>SPAC25A8.01c ||snf2SR|fun thirty related protein
Fft3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 922
Score = 25.8 bits (54), Expect = 8.3
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 409 LEHLKQITDIDDDYISNAQDENFGIGY 489
LEH KQ++DI + S+A N Y
Sbjct: 73 LEHFKQLSDISPSFTSSANSINQPYNY 99
>SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 175
Score = 25.8 bits (54), Expect = 8.3
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 138 LFTVRSFRSILKLICV*LVPTFQIYHEQCSCC 233
LF VR R LK + V +VP +Y + CC
Sbjct: 31 LFLVRVCRQ-LKTVTVLIVPVLPVYTNKVLCC 61
>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 601
Score = 25.8 bits (54), Expect = 8.3
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Frame = +1
Query: 598 WCGGWHHAHNNRAEGFCYVNDIVIAIEKLKG-KFKNILYVDL-DVHHGNGVQDAYWTTRS 771
W GG +A+ F + +++L K ++L VD D+H GNG+ DA +
Sbjct: 59 WLGGHLRDARYKAD-FGEFKSFALRMKELADFKGVDLLMVDTGDLHDGNGLSDAS-DPQG 116
Query: 772 VYTLSFHKFEP 804
+YT + + P
Sbjct: 117 IYTNNIFTYLP 127
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,602,026
Number of Sequences: 5004
Number of extensions: 79262
Number of successful extensions: 189
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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