Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_M03
         (895 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   2.8  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   8.7  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    22   8.7  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   8.7  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -1

Query: 193 TNYTQINFKIERNDLTVNK*E 131
           ++Y+ ++ K+ERNDL + K E
Sbjct: 294 SDYSYLDEKLERNDLDLEKYE 314


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 173 INLCVISTYISDLS*TMLVLLI 238
           ++LC I  Y+S++S  + VL I
Sbjct: 111 VSLCKIRAYVSEMSSYVSVLTI 132


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 11/47 (23%), Positives = 22/47 (46%)
 Frame = +1

Query: 241 WDEKLVKECIRLPAVFGRARLVHNLIEAYGLISKLKVIRSSPASYED 381
           WD K+ + CI  P      + + +LI   G ++ ++   + P   +D
Sbjct: 31  WDGKMPQPCILKPKPLWTGKQISSLI-IPGNVNMIRTHSTXPXEEDD 76


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 358 SSPASYEDLNVFHSDLYLEH 417
           SSP  + DL ++ S  +L H
Sbjct: 59  SSPPEHRDLPIYQSHHHLHH 78


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 239,919
Number of Sequences: 438
Number of extensions: 5639
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)