Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_M02
(899 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0807 - 28192320-28192494,28192611-28192759,28192882-281929... 33 0.23
12_02_0692 - 22197582-22198214,22198761-22198935,22199089-221991... 32 0.54
10_01_0244 + 2549102-2549158,2549205-2549334,2549422-2549559,255... 31 0.94
09_04_0579 + 18676165-18676524,18676846-18677058,18677136-186772... 31 0.94
06_03_1117 + 27750291-27750338,27751360-27751812,27751987-277521... 30 2.9
11_01_0106 - 792190-792730,793905-794018,794206-794540 29 3.8
05_05_0007 - 21465506-21466273 29 5.0
03_05_0695 - 26851370-26851495,26852949-26853398 29 5.0
01_04_0095 + 15979884-15980234 29 5.0
10_08_0118 + 14948636-14949667,14949893-14949953,14951226-14951977 29 6.7
03_05_0935 - 28948368-28948769,28949028-28949120,28949240-289493... 29 6.7
09_02_0207 - 5793848-5794276,5794523-5794645,5794742-5795250,579... 28 8.8
03_02_0955 - 12690405-12690842,12690940-12691130,12691208-126917... 28 8.8
>04_04_0807 -
28192320-28192494,28192611-28192759,28192882-28192980,
28193212-28193433,28193522-28193611,28193837-28193959,
28194040-28194199,28194288-28194347,28194484-28194574,
28194667-28194730
Length = 410
Score = 33.5 bits (73), Expect = 0.23
Identities = 24/83 (28%), Positives = 39/83 (46%)
Frame = +1
Query: 565 FDLPADVLIGAINLFDRFLTKMKVRPCHVPCITVSCMNISIDEYAARTNIKRTVSIEELV 744
F+L + L +N+ DRFL K V + + V+ M + A + +E+LV
Sbjct: 201 FELMDETLFLTVNIVDRFLEKQVVPRKKLQLVGVTAMLL-----ACKYEEVAVPVVEDLV 255
Query: 745 SISQSACTXGDVSRMSRVIQDKL 813
IS A T G + M ++I + L
Sbjct: 256 LISDRAYTKGQILEMEKLILNTL 278
>12_02_0692 - 22197582-22198214,22198761-22198935,22199089-22199185,
22199359-22199473,22199546-22199633,22199972-22200063,
22200138-22200629,22201025-22201048,22201348-22203489
Length = 1285
Score = 32.3 bits (70), Expect = 0.54
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Frame = +1
Query: 184 GPS--RPVLKSSGRRAEGGSARAYTTTLAAACSAHA*V-PIHPPLAPTVPIMLRAGARHP 354
GPS P + G+RA GSARA ++ + + P++ P V ML G+R P
Sbjct: 1208 GPSGASPAVNGGGKRAADGSARATARSVLKEVNRNTPTPPLNSMSVPKVRSMLGVGSRRP 1267
Query: 355 DAAECRSPVASTSRDD 402
E + DD
Sbjct: 1268 AVLESVRRLEPFGSDD 1283
>10_01_0244 +
2549102-2549158,2549205-2549334,2549422-2549559,
2550078-2550205,2550346-2550396
Length = 167
Score = 31.5 bits (68), Expect = 0.94
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 743 CLSHNRPAPXATCPGCLESFRTSWDWHEE 829
C+S ++P CP CLE FR S ++ EE
Sbjct: 91 CVSEDKPDEEDVCPICLEVFRYSPEYDEE 119
>09_04_0579 +
18676165-18676524,18676846-18677058,18677136-18677288,
18677503-18677622,18677696-18677782,18677876-18678313
Length = 456
Score = 31.5 bits (68), Expect = 0.94
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +3
Query: 609 RQVSDQDEGEAVSCAVHYCLLHEHIHRRVCG*DQHKKDSVNRGAGVYLTIGLHRWRRVQD 788
++V D D +CA H + +CG D K D V+R + ++ H RR+ D
Sbjct: 165 KKVGDYDGARCCACAKPEIAATPHKTKDICGMDDAKSDVVDRSSVSHMD---HEERRMSD 221
Query: 789 VS 794
+S
Sbjct: 222 LS 223
>06_03_1117 +
27750291-27750338,27751360-27751812,27751987-27752161,
27752227-27752551,27752705-27752786,27752820-27752889,
27753341-27753420,27753514-27753750
Length = 489
Score = 29.9 bits (64), Expect = 2.9
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +1
Query: 475 LRLPAESESGEVTTGARDGAAHVLRCLKVWFDLPADVLIGAINLF 609
LR+P ++ + VT GA A+ + W D+P V++ + F
Sbjct: 310 LRIPTQTANRRVTNGAHQRASQQYSYNRFWQDIPILVMVSMLAYF 354
>11_01_0106 - 792190-792730,793905-794018,794206-794540
Length = 329
Score = 29.5 bits (63), Expect = 3.8
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Frame = +1
Query: 205 KSSGRRAEGGSARAYTTTLAAACSAHA*VPIHPPLAPTV-PIMLRAGARHPDAAECRSPV 381
K + +R GG A YT A S H I P L P + +R H A SP
Sbjct: 166 KKTVQRNGGGGAAGYT---VAYISEHTCKSIEPSLPPVILDTTVRTTNNHQQPAAAESPA 222
Query: 382 ASTS 393
A++S
Sbjct: 223 ATSS 226
>05_05_0007 - 21465506-21466273
Length = 255
Score = 29.1 bits (62), Expect = 5.0
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Frame = +1
Query: 301 PPLAPTVPIMLRAGARHPDAAECRSPVASTSRDDVDSAQQLYATLNEYLLLEQKSQPKLR 480
PP A T P + +HP A RSP A+++ + ++ E ++
Sbjct: 26 PPPAATPPAWMWPSCKHPRAHSFRSPSAASAAAAAKTIASIFLDSGESSFANSSARMHHD 85
Query: 481 LPAESESGE--VTTGARDGAAHVLRCLK 558
++S S E V+ A D A ++R L+
Sbjct: 86 CASDSLSTESDVSATAEDMADAIVRGLR 113
>03_05_0695 - 26851370-26851495,26852949-26853398
Length = 191
Score = 29.1 bits (62), Expect = 5.0
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
Frame = +3
Query: 648 CAVHYCLLHEHIHRRV--CG*DQHKKDSVN--RGAG--VYLTIG 761
C HYC LH H + G + H++D + GAG V LT+G
Sbjct: 12 CGGHYCQLHHHRPEEIAGAGAESHRRDGSSGCGGAGPMVVLTLG 55
>01_04_0095 + 15979884-15980234
Length = 116
Score = 29.1 bits (62), Expect = 5.0
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -3
Query: 258 CRCICPCRSPLCSTTRRLEDRAR 190
CRC CP SP+ S R RAR
Sbjct: 30 CRCPCPGASPMASPCCRTRSRAR 52
>10_08_0118 + 14948636-14949667,14949893-14949953,14951226-14951977
Length = 614
Score = 28.7 bits (61), Expect = 6.7
Identities = 19/44 (43%), Positives = 23/44 (52%)
Frame = -3
Query: 357 IRVPRARSQHDRDGWRERRVNRHLSVRRASSG*CRCICPCRSPL 226
+RV A RDGW V RH +V+ G R +C CRSPL
Sbjct: 460 VRVIDADHGSGRDGWFSIEVARH-TVKDEIVGLRRHVC-CRSPL 501
>03_05_0935 -
28948368-28948769,28949028-28949120,28949240-28949329,
28949413-28949477,28950442-28950512,28950610-28950648,
28950832-28951250
Length = 392
Score = 28.7 bits (61), Expect = 6.7
Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Frame = -1
Query: 377 GERHSAASGCLAPALNMIGTVGASGG*IGT*ACAEQAAANVVVYARADPPSARRPDDLRT 198
G R AA+ A A + + ASGG G A + A + A SARR R
Sbjct: 45 GARPGAAAAAAAAAADAVAASVASGGKKGKAAVVLRVPAGSPIVAARRQASARREIAARR 104
Query: 197 GRE-GPSTRMLP 165
RE G ++P
Sbjct: 105 AREAGREYELIP 116
>09_02_0207 -
5793848-5794276,5794523-5794645,5794742-5795250,
5795543-5795648,5795798-5795959,5796094-5796144,
5796229-5796394,5796624-5797093
Length = 671
Score = 28.3 bits (60), Expect = 8.8
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 328 MLRAGARHPDAAECRSPVASTSRDDVDSAQQLYATLNEYLLLE-QKSQP 471
+L R P+ + SP+ S +D + S+ ++ +NE L LE QK P
Sbjct: 253 ILNGNYRIPELPKYSSPITSLIKDMLQSSPDVWFRVNELLPLELQKDLP 301
>03_02_0955 -
12690405-12690842,12690940-12691130,12691208-12691718,
12692240-12693171,12693260-12693351,12693430-12693509,
12693568-12693621,12693734-12693850,12693949-12694194,
12694273-12694432,12694512-12694576,12694686-12694877,
12694980-12695061,12695153-12695925
Length = 1310
Score = 28.3 bits (60), Expect = 8.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 250 TTTLAAACSAHA*VPIHPPLAPTVPIMLRAGARHPDAA 363
+ + AAA +A+ P P PT +LR +R P AA
Sbjct: 2 SASAAAAAAAYGTPPSQQPPPPTAESVLRVASRDPSAA 39
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,267,878
Number of Sequences: 37544
Number of extensions: 487881
Number of successful extensions: 1694
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1694
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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