Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_L24
         (881 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1769 + 29377784-29377878,29377993-29378180,29378340-293784...    30   2.8  
12_02_0506 - 19794383-19794670,19795066-19795140,19795337-197987...    29   6.5  
05_02_0077 - 6374282-6374313,6374448-6374524,6375219-6375478,637...    29   6.5  

>07_03_1769 +
           29377784-29377878,29377993-29378180,29378340-29378472,
           29378580-29378715,29378996-29379072,29379162-29380830,
           29380935-29381018,29381120-29381224,29381302-29381358
          Length = 847

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -3

Query: 531 NECNGXVNL-FIAAYNGYK*SNSITNFTNKAFFSLHSSCGLSKLINVSYHV 382
           + C G  NL  +  Y+       +  +TN +FF+ HS+C  +KLI+   H+
Sbjct: 126 HRCRGPPNLSLLDKYDADGEGACLKRYTNPSFFTSHSACS-TKLIHQRIHM 175


>12_02_0506 - 19794383-19794670,19795066-19795140,19795337-19798704,
            19799503-19799671,19799758-19799850
          Length = 1330

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 566  NLPHLPLNLKHKMNAMVXLTCL 501
            NLPHLP +LKH     V ++CL
Sbjct: 960  NLPHLPYSLKHLGINKVGISCL 981


>05_02_0077 -
           6374282-6374313,6374448-6374524,6375219-6375478,
           6376036-6376278,6376374-6376391
          Length = 209

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 15/58 (25%), Positives = 29/58 (50%)
 Frame = -1

Query: 668 QPKTEXXRVRSEEXXSAQYANRXSXXLADSLMQKNLPHLPLNLKHKMNAMVXLTCLLQ 495
           QP+ E  +V+ EE    QY +  S  L    +  + P+  L L+H    ++ ++ L++
Sbjct: 9   QPRGERRKVQEEEKHQGQYIDGLSPQLPPLHLISSFPNHSLLLEHTPLFLIIISSLIR 66


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,408,010
Number of Sequences: 37544
Number of extensions: 235788
Number of successful extensions: 291
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 291
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)