Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_L23
         (866 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|...   283   3e-77
SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase...   282   5e-77
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom...    26   6.0  
SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual           26   8.0  
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi...    26   8.0  

>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
           Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score =  283 bits (693), Expect = 3e-77
 Identities = 143/211 (67%), Positives = 164/211 (77%), Gaps = 3/211 (1%)
 Frame = +1

Query: 121 KIGINGFGRIGRLVLRASIEKGA-QVVAINDPFIGLDYMVYLFKYDSTHGRXKGSVEVQD 297
           K+GINGFGRIGR+VLR +I  G  QVVA+NDPFI LDYM Y+FKYDSTHGR +GSVE + 
Sbjct: 5   KVGINGFGRIGRIVLRNAILTGKIQVVAVNDPFIDLDYMAYMFKYDSTHGRFEGSVETKG 64

Query: 298 GFLVVNGNKIAVFSERDPKAIPWGKAGAEYVVXSTGVFTTTDKASAHLEGGAKKVIISAP 477
           G LV++G+ I V +ERDP  I W  +GAEYV+ STGVFTT + ASAHL+GGAK+VIISAP
Sbjct: 65  GKLVIDGHSIDVHNERDPANIKWSASGAEYVIESTGVFTTKETASAHLKGGAKRVIISAP 124

Query: 478 SADAPMFVVGVNLXAYDPSXKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHAXTAN 657
           S DAPMFVVGVNL  ++PS KVISNASCTTNCLAPLAKVI+D F I EGLMTTVHA TA 
Sbjct: 125 SKDAPMFVVGVNLEKFNPSEKVISNASCTTNCLAPLAKVINDTFGIEEGLMTTVHATTAT 184

Query: 658 XKLL-MXFXKXWRDGRGAKKN-HXAPXGAAK 744
            K +     K WR GRGA  N   +  GAAK
Sbjct: 185 QKTVDGPSKKDWRGGRGASANIIPSSTGAAK 215


>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
           Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score =  282 bits (691), Expect = 5e-77
 Identities = 142/211 (67%), Positives = 164/211 (77%), Gaps = 3/211 (1%)
 Frame = +1

Query: 121 KIGINGFGRIGRLVLR-ASIEKGAQVVAINDPFIGLDYMVYLFKYDSTHGRXKGSVEVQD 297
           K+GINGFGRIGR+VLR A + K  QVVAINDPFI L+YM Y+FKYDSTHGR  GSVE++D
Sbjct: 5   KVGINGFGRIGRIVLRNALVAKTIQVVAINDPFIDLEYMAYMFKYDSTHGRFDGSVEIKD 64

Query: 298 GFLVVNGNKIAVFSERDPKAIPWGKAGAEYVVXSTGVFTTTDKASAHLEGGAKKVIISAP 477
           G LV++GN I V +ERDP  I W  +GA+YV+ STGVFTT + ASAHL+GGAK+VIISAP
Sbjct: 65  GKLVIDGNAIDVHNERDPADIKWSTSGADYVIESTGVFTTQETASAHLKGGAKRVIISAP 124

Query: 478 SADAPMFVVGVNLXAYDPSXKVISNASCTTNCLAPLAKVIHDNFEIVEGLMTTVHAXTAN 657
           S DAPM+VVGVN   ++PS KVISNASCTTNCLAPLAKVI+D F I EGLMTTVHA TA 
Sbjct: 125 SKDAPMYVVGVNEEKFNPSEKVISNASCTTNCLAPLAKVINDTFGIEEGLMTTVHATTAT 184

Query: 658 XKLL-MXFXKXWRDGRGAKKN-HXAPXGAAK 744
            K +     K WR GRGA  N   +  GAAK
Sbjct: 185 QKTVDGPSKKDWRGGRGASANIIPSSTGAAK 215


>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = -3

Query: 486 ISTGS*YNNFFSTSLQVSRCFICSGKDTSRLYNIFSPSFSPRNGLRVPF*E-NSNFVTIN 310
           + +G  +N  +S    +  C +C G     + ++ +P F  R  +R+P    N N  TI 
Sbjct: 153 VCSGQGFNPKYSADKAIESCPVCGGSGFRVIEHMIAPGF--RQQMRMPCNACNGNGRTIK 210

Query: 309 NK 304
           +K
Sbjct: 211 HK 212


>SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 604

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -3

Query: 372 FSPRNGLRVPF*ENSNFVTINNKESILNLNT 280
           FSP     V   E+++  +++N +S+ NLN+
Sbjct: 67  FSPSKATTVSLKESASLTSLSNNKSVSNLNS 97


>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
           Usp107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 77  SVIQQIFYNLPRTCQKLESMDL 142
           +++QQI +NL R CQ + + D+
Sbjct: 245 NILQQIRFNLERICQDIGNFDV 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,980,605
Number of Sequences: 5004
Number of extensions: 59177
Number of successful extensions: 179
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)