Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_L20
         (862 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032632-14|CAO82067.1|  504|Caenorhabditis elegans Hypothetical...    28   7.4  
AL032632-13|CAA21587.2|  507|Caenorhabditis elegans Hypothetical...    28   7.4  
AC024763-7|AAF60517.1|  304|Caenorhabditis elegans Pdgf/vegf gro...    28   7.4  
AL023844-10|CAA19530.3|  503|Caenorhabditis elegans Hypothetical...    28   9.8  
AL023844-9|CAH04760.1|  512|Caenorhabditis elegans Hypothetical ...    28   9.8  

>AL032632-14|CAO82067.1|  504|Caenorhabditis elegans Hypothetical
           protein Y11D7A.12b protein.
          Length = 504

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 19/78 (24%), Positives = 35/78 (44%)
 Frame = -1

Query: 403 SVNISASKLKSAPGIQLKPLNYSSLLATRSNEAIKMKPLQEIFALKHVNTLFTQRINSSS 224
           S +++A  L  AP ++       +   + S  A+ M+ + +      VN L    I+ SS
Sbjct: 19  SSSLNAPSLADAPEVRSDDGEAETSEPSTSVTAVPMEIVSQASTSAPVNQLLASGIDMSS 78

Query: 223 VYKHNGYIRTRKTGRSSG 170
           V K+N  ++      S+G
Sbjct: 79  VIKNNAVLQALLASASAG 96


>AL032632-13|CAA21587.2|  507|Caenorhabditis elegans Hypothetical
           protein Y11D7A.12a protein.
          Length = 507

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 19/78 (24%), Positives = 35/78 (44%)
 Frame = -1

Query: 403 SVNISASKLKSAPGIQLKPLNYSSLLATRSNEAIKMKPLQEIFALKHVNTLFTQRINSSS 224
           S +++A  L  AP ++       +   + S  A+ M+ + +      VN L    I+ SS
Sbjct: 19  SSSLNAPSLADAPEVRSDDGEAETSEPSTSVTAVPMEIVSQASTSAPVNQLLASGIDMSS 78

Query: 223 VYKHNGYIRTRKTGRSSG 170
           V K+N  ++      S+G
Sbjct: 79  VIKNNAVLQALLASASAG 96


>AC024763-7|AAF60517.1|  304|Caenorhabditis elegans Pdgf/vegf growth
           factor relatedprotein 1 protein.
          Length = 304

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 171 PELLPVLRVLIYPLCL*TEELLIRCVNNVLTCFKAKIS 284
           P+L    +VL+YP C   ++ +  C N+V TC    I+
Sbjct: 124 PQLSDDPQVLMYPKCYEVKQCVGSCCNSVETCHPGTIN 161


>AL023844-10|CAA19530.3|  503|Caenorhabditis elegans Hypothetical
           protein Y48A6B.6a protein.
          Length = 503

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -1

Query: 202 IRTRKTGR-SSGLQIYADTRRAKFKQ 128
           IR  K GR SSGLQ++  T +A F+Q
Sbjct: 358 IRVLKLGRYSSGLQMFGKTLKASFRQ 383


>AL023844-9|CAH04760.1|  512|Caenorhabditis elegans Hypothetical
           protein Y48A6B.6b protein.
          Length = 512

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -1

Query: 202 IRTRKTGR-SSGLQIYADTRRAKFKQ 128
           IR  K GR SSGLQ++  T +A F+Q
Sbjct: 394 IRVLKLGRYSSGLQMFGKTLKASFRQ 419


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,161,902
Number of Sequences: 27780
Number of extensions: 230106
Number of successful extensions: 500
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)