Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_L19
         (893 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y09065-1|CAA70286.1|  149|Drosophila melanogaster cytochrome c o...   149   5e-36
BT011037-1|AAR30197.1|  149|Drosophila melanogaster RE42582p pro...   149   7e-36
AE014297-1390|AAN13534.1|  149|Drosophila melanogaster CG14724-P...   149   7e-36
AE014297-1389|AAF54706.1|  149|Drosophila melanogaster CG14724-P...   149   7e-36

>Y09065-1|CAA70286.1|  149|Drosophila melanogaster cytochrome c
           oxidase subunit Vapreprotein protein.
          Length = 149

 Score =  149 bits (361), Expect = 5e-36
 Identities = 66/97 (68%), Positives = 80/97 (82%)
 Frame = +1

Query: 193 GPVESDEEFDNRYEAYFNRKDIDGWEIRKGMNDLCGMDLVPDPKIIKAALHACRRVNDYA 372
           G  ES EEFD RYE YF+R+ IDGWEIRKGMNDL GMDLVP+PKII+A L A RRVND A
Sbjct: 32  GTEESAEEFDKRYEKYFSREGIDGWEIRKGMNDLLGMDLVPNPKIIEAGLRASRRVNDIA 91

Query: 373 LAVRFIEACKDKCGNKVNEIYPYIIQEIKPTLTELGI 483
           LA+R++E CKDKCG++   +YPY++++I PTL ELGI
Sbjct: 92  LAIRWLEGCKDKCGDQKATLYPYLLEKITPTLQELGI 128



 Score = 35.9 bits (79), Expect = 0.075
 Identities = 16/20 (80%), Positives = 17/20 (85%)
 Frame = +2

Query: 482 LTTPEELGYDKPELALXSVY 541
           + T EELGYDKPELAL SVY
Sbjct: 128 IPTIEELGYDKPELALKSVY 147


>BT011037-1|AAR30197.1|  149|Drosophila melanogaster RE42582p
           protein.
          Length = 149

 Score =  149 bits (360), Expect = 7e-36
 Identities = 66/97 (68%), Positives = 79/97 (81%)
 Frame = +1

Query: 193 GPVESDEEFDNRYEAYFNRKDIDGWEIRKGMNDLCGMDLVPDPKIIKAALHACRRVNDYA 372
           G  ES EEFD RYE YF+R+ IDGWEIRKGMNDL GMDLVP PKII+A L A RRVND A
Sbjct: 32  GTEESAEEFDKRYEKYFSREGIDGWEIRKGMNDLLGMDLVPSPKIIEAGLRASRRVNDIA 91

Query: 373 LAVRFIEACKDKCGNKVNEIYPYIIQEIKPTLTELGI 483
           LA+R++E CKDKCG++   +YPY++++I PTL ELGI
Sbjct: 92  LAIRWLEGCKDKCGDQKATLYPYLLEKITPTLQELGI 128



 Score = 35.9 bits (79), Expect = 0.075
 Identities = 16/20 (80%), Positives = 17/20 (85%)
 Frame = +2

Query: 482 LTTPEELGYDKPELALXSVY 541
           + T EELGYDKPELAL SVY
Sbjct: 128 IPTIEELGYDKPELALKSVY 147


>AE014297-1390|AAN13534.1|  149|Drosophila melanogaster CG14724-PB,
           isoform B protein.
          Length = 149

 Score =  149 bits (360), Expect = 7e-36
 Identities = 66/97 (68%), Positives = 79/97 (81%)
 Frame = +1

Query: 193 GPVESDEEFDNRYEAYFNRKDIDGWEIRKGMNDLCGMDLVPDPKIIKAALHACRRVNDYA 372
           G  ES EEFD RYE YF+R+ IDGWEIRKGMNDL GMDLVP PKII+A L A RRVND A
Sbjct: 32  GTEESAEEFDKRYEKYFSREGIDGWEIRKGMNDLLGMDLVPSPKIIEAGLRASRRVNDIA 91

Query: 373 LAVRFIEACKDKCGNKVNEIYPYIIQEIKPTLTELGI 483
           LA+R++E CKDKCG++   +YPY++++I PTL ELGI
Sbjct: 92  LAIRWLEGCKDKCGDQKATLYPYLLEKITPTLQELGI 128



 Score = 35.9 bits (79), Expect = 0.075
 Identities = 16/20 (80%), Positives = 17/20 (85%)
 Frame = +2

Query: 482 LTTPEELGYDKPELALXSVY 541
           + T EELGYDKPELAL SVY
Sbjct: 128 IPTIEELGYDKPELALKSVY 147


>AE014297-1389|AAF54706.1|  149|Drosophila melanogaster CG14724-PA,
           isoform A protein.
          Length = 149

 Score =  149 bits (360), Expect = 7e-36
 Identities = 66/97 (68%), Positives = 79/97 (81%)
 Frame = +1

Query: 193 GPVESDEEFDNRYEAYFNRKDIDGWEIRKGMNDLCGMDLVPDPKIIKAALHACRRVNDYA 372
           G  ES EEFD RYE YF+R+ IDGWEIRKGMNDL GMDLVP PKII+A L A RRVND A
Sbjct: 32  GTEESAEEFDKRYEKYFSREGIDGWEIRKGMNDLLGMDLVPSPKIIEAGLRASRRVNDIA 91

Query: 373 LAVRFIEACKDKCGNKVNEIYPYIIQEIKPTLTELGI 483
           LA+R++E CKDKCG++   +YPY++++I PTL ELGI
Sbjct: 92  LAIRWLEGCKDKCGDQKATLYPYLLEKITPTLQELGI 128



 Score = 35.9 bits (79), Expect = 0.075
 Identities = 16/20 (80%), Positives = 17/20 (85%)
 Frame = +2

Query: 482 LTTPEELGYDKPELALXSVY 541
           + T EELGYDKPELAL SVY
Sbjct: 128 IPTIEELGYDKPELALKSVY 147


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,357,149
Number of Sequences: 53049
Number of extensions: 545453
Number of successful extensions: 1068
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4341591036
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)