Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_L19
         (893 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032626-13|CAA21532.1|  174|Caenorhabditis elegans Hypothetical...   123   2e-28
Z47075-7|CAA87384.1|  394|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z36752-8|CAA85330.1|  394|Caenorhabditis elegans Hypothetical pr...    30   1.9  

>AL032626-13|CAA21532.1|  174|Caenorhabditis elegans Hypothetical
           protein Y37D8A.14 protein.
          Length = 174

 Score =  123 bits (297), Expect = 2e-28
 Identities = 52/94 (55%), Positives = 74/94 (78%), Gaps = 2/94 (2%)
 Frame = +1

Query: 211 EEFDNRYEAYFNRKDIDGWEIRKGMNDLCGMDLVPDPKIIKAALHACRRVNDYALAVRFI 390
           ++FDN +  Y NR +IDGWE+RK +++L   D++PDPK+++AAL ACRRVND+ALAVRF+
Sbjct: 42  DKFDNHFINYLNRPEIDGWEVRKALSELHDYDVIPDPKVVEAALRACRRVNDFALAVRFL 101

Query: 391 EACKDKCGNKVNE--IYPYIIQEIKPTLTELGID 486
           EA K KCG + N   +Y YI+++++P L ELGID
Sbjct: 102 EAIKIKCGAQKNRDTVYAYIVKQVEPVLKELGID 135


>Z47075-7|CAA87384.1|  394|Caenorhabditis elegans Hypothetical
           protein E02H1.2 protein.
          Length = 394

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = -3

Query: 117 RT*CGFQHFRQIFFLYSTNWQGIGQNLKDSL 25
           RT CG+  F ++FF+ S N +GI + L+D L
Sbjct: 245 RTICGWSGFERVFFVSSLNGEGIDE-LRDHL 274


>Z36752-8|CAA85330.1|  394|Caenorhabditis elegans Hypothetical
           protein E02H1.2 protein.
          Length = 394

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = -3

Query: 117 RT*CGFQHFRQIFFLYSTNWQGIGQNLKDSL 25
           RT CG+  F ++FF+ S N +GI + L+D L
Sbjct: 245 RTICGWSGFERVFFVSSLNGEGIDE-LRDHL 274


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,753,649
Number of Sequences: 27780
Number of extensions: 286219
Number of successful extensions: 677
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)