Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_L18
(908 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ... 86 1e-15
UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular organi... 72 2e-11
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ... 68 4e-10
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ... 64 6e-09
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE... 49 2e-04
UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1; ... 44 0.004
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma... 37 0.62
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob... 36 1.9
UniRef50_UPI00015C63F8 Cluster: hypothetical protein CKO_pCKO3p0... 34 4.4
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru... 34 5.8
UniRef50_Q8GUF1 Cluster: Reverse transcriptase; n=1; Cicer ariet... 33 7.6
>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
root|Rep: Putative uncharacterized protein - Salmonella
typhimurium
Length = 127
Score = 85.8 bits (203), Expect = 1e-15
Identities = 45/62 (72%), Positives = 46/62 (74%)
Frame = +2
Query: 683 PWTSITKIDAQVXGGETRQDYKDTRRSPLXAPSCALLFRPCRLLTXYLSAFLPSGKAWGF 862
P TSITKIDAQV GGETRQDYKDTRR PL APSCALLFRPCRL L +AW F
Sbjct: 22 PLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPCRLPDTCPPFSL--REAWRF 79
Query: 863 LI 868
LI
Sbjct: 80 LI 81
>UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular
organisms|Rep: Predicted protein - Nematostella
vectensis
Length = 97
Score = 72.1 bits (169), Expect = 2e-11
Identities = 33/40 (82%), Positives = 34/40 (85%)
Frame = +2
Query: 683 PWTSITKIDAQVXGGETRQDYKDTRRSPLXAPSCALLFRP 802
P TSITK DAQ+ GGETRQDYKDTRR PL APSCALLF P
Sbjct: 58 PLTSITKSDAQISGGETRQDYKDTRRFPLAAPSCALLFLP 97
>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
Escherichia coli|Rep: Putative uncharacterized protein -
Escherichia coli
Length = 147
Score = 67.7 bits (158), Expect = 4e-10
Identities = 31/40 (77%), Positives = 32/40 (80%)
Frame = +2
Query: 683 PWTSITKIDAQVXGGETRQDYKDTRRSPLXAPSCALLFRP 802
P TSI K DAQ+ GGETRQDYKD RR PL APSCALLF P
Sbjct: 90 PLTSIAKSDAQISGGETRQDYKDPRRFPLVAPSCALLFLP 129
Score = 53.2 bits (122), Expect = 9e-06
Identities = 22/29 (75%), Positives = 25/29 (86%)
Frame = +3
Query: 465 VCXLGALPLPRSLTRCARSFGCGERYQLT 551
+C G +PLPRSLTR ARSFGCGERY+LT
Sbjct: 30 ICDTGDIPLPRSLTRYARSFGCGERYRLT 58
>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
root|Rep: Putative uncharacterized protein - Escherichia
coli
Length = 61
Score = 63.7 bits (148), Expect = 6e-09
Identities = 38/58 (65%), Positives = 39/58 (67%)
Frame = -1
Query: 686 RGAEPMEKRQQRGLFTVPGLLLAFCSHVLSCVIPLIXWITVLPPLSELIPLAAAERPS 513
RGAEPMEKR + L V LL CS L PLI WITVLPPLSEL PLAA ERPS
Sbjct: 4 RGAEPMEKRLRCWLLPVLCFLLT-CSFRL---YPLILWITVLPPLSELTPLAAVERPS 57
>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
Myxococcus xanthus
Length = 486
Score = 48.8 bits (111), Expect = 2e-04
Identities = 28/54 (51%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +3
Query: 429 CINESANARGXAVCXLGALPLPRSLTRCARSFGCGERYQL-TQRR*YGYPXNQG 587
CI + A AR AV L ALPL RS TRC RS GCG + R YG P QG
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQG 319
>UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1;
Beggiatoa sp. SS|Rep: Putative uncharacterized protein -
Beggiatoa sp. SS
Length = 114
Score = 44.4 bits (100), Expect = 0.004
Identities = 22/50 (44%), Positives = 31/50 (62%)
Frame = +2
Query: 653 VAGVFP*APPPWTSITKIDAQVXGGETRQDYKDTRRSPLXAPSCALLFRP 802
++ +FP PP T+ITKI Q +T+ +YK T PL +PS +LLF P
Sbjct: 65 LSSLFPYNSPPLTTITKIYPQFKNTQTQHNYKYTTPFPLQSPSYSLLFPP 114
>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
Magnoliophyta|Rep: Putative reverse transcriptase -
Zingiber officinale (Ginger)
Length = 49
Score = 37.1 bits (82), Expect = 0.62
Identities = 18/27 (66%), Positives = 19/27 (70%)
Frame = +1
Query: 397 RFRVEVWEVFSALMNRPTXGXRRFAYW 477
RF V V +ALMNRPT G RRFAYW
Sbjct: 15 RFPVGKPVVPAALMNRPTRGERRFAYW 41
>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
Enterobacteriaceae|Rep: Lactose operon repressor -
Escherichia coli (strain K12)
Length = 360
Score = 35.5 bits (78), Expect = 1.9
Identities = 17/24 (70%), Positives = 19/24 (79%)
Frame = -2
Query: 499 ERGSGRAPNXQTAXPRALADSLMQ 428
+R + APN QTA PRALADSLMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348
>UniRef50_UPI00015C63F8 Cluster: hypothetical protein
CKO_pCKO3p06146; n=1; Citrobacter koseri ATCC
BAA-895|Rep: hypothetical protein CKO_pCKO3p06146 -
Citrobacter koseri ATCC BAA-895
Length = 125
Score = 34.3 bits (75), Expect = 4.4
Identities = 19/35 (54%), Positives = 21/35 (60%)
Frame = +3
Query: 744 IKIPGVPPXKLPRALSCSDPAAY*RXTCPPFSLRG 848
+KI V LP ALSCS+PA R PPFSL G
Sbjct: 32 LKIITVSDESLPLALSCSNPAVS-RIPVPPFSLAG 65
>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
(SV40)
Length = 364
Score = 33.9 bits (74), Expect = 5.8
Identities = 14/18 (77%), Positives = 15/18 (83%)
Frame = +3
Query: 231 DPXMIXYIDEXGQTTTKM 284
DP MI YIDE GQTTT+M
Sbjct: 346 DPDMIRYIDEFGQTTTRM 363
>UniRef50_Q8GUF1 Cluster: Reverse transcriptase; n=1; Cicer
arietinum|Rep: Reverse transcriptase - Cicer arietinum
(Chickpea) (Garbanzo)
Length = 37
Score = 33.5 bits (73), Expect = 7.6
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +1
Query: 562 NTVIHXIRGITQERTCE 612
NTVIH +GITQERTCE
Sbjct: 21 NTVIHXNQGITQERTCE 37
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 743,788,339
Number of Sequences: 1657284
Number of extensions: 12837504
Number of successful extensions: 28651
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 27665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28639
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 82801539422
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -