Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_L18
         (908 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    27   3.7  
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    26   6.4  
SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces...    26   8.5  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    26   8.5  

>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 18/70 (25%), Positives = 31/70 (44%)
 Frame = +3

Query: 687 GRASQKSTLKSXVAKPDRTIKIPGVPPXKLPRALSCSDPAAY*RXTCPPFSLRGKRGAFS 866
           G+  +K    S +  P   I +  + P   PR  S   P    R   PP  L+ +   F+
Sbjct: 126 GKGKKKKAHVSFLEGPVEEIPLDDIEPTS-PREAS---PVFNGRPPIPPEFLKSRHKEFT 181

Query: 867 XPPPVRYLSS 896
            P P++++S+
Sbjct: 182 IPNPLQFISN 191


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 685 LDEHHKNRRSSXRWRNPTGL*RYQA 759
           L ++HKNR+S+     P GL  Y+A
Sbjct: 387 LQDYHKNRKSNFNKPGPDGLGLYKA 411


>SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 451

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 138 LFQCLGPGYYYLPSWLQXAISLFIQQLKN 52
           L+QC  P   Y+P  +  AIS+  ++  N
Sbjct: 51  LYQCAVPSMIYVPPMINEAISIQHEEFNN 79


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -1

Query: 119 LGIIICHPGCXLQLVCLYNN 60
           LG I CH GC     C YNN
Sbjct: 499 LGEIRCHIGCLSCTKCKYNN 518


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,886,055
Number of Sequences: 5004
Number of extensions: 46203
Number of successful extensions: 111
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)