Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_L18
         (908 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    24   1.7  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   2.2  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   2.9  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.9  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   6.7  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   6.7  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    22   8.9  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    22   8.9  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   8.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   8.9  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +2

Query: 749 DTRRSPLXAPSCALLFRPCRLLTXYLSAFLPSGKAWGFLIXPPC*VSQF 895
           + R  P+   SC L+   C+ +         +G+ +G+L  P   +SQF
Sbjct: 165 ELRNFPMDRQSCPLILGSCKCIYVQSINLCMAGRLFGYL-CPGMALSQF 212


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 611 SHVLSCVIPLIXWITVLPPLSELIPLAA 528
           S +LS V+ L+    +LPP S ++PL A
Sbjct: 270 SILLSLVVFLLLVSKILPPTSLVLPLIA 297


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 428 EKTSHTSTLNLKHKMNAIVVV 366
           E    T TLNLKH   A++V+
Sbjct: 56  EDAEDTQTLNLKHLRAAVLVL 76


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 9/38 (23%), Positives = 17/38 (44%)
 Frame = -2

Query: 745 IVLSGFATXDLSVDFCDARPGGRSLWKNASNAAFLRFL 632
           ++   +A  D+  + CD +PG     K       L++L
Sbjct: 478 VMAFAYAFRDMHKELCDGKPGLCDAMKPTKGTELLKYL 515


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = +3

Query: 705 STLKSXVAKPDRTIKIPGVPPXKLPRALSCSDPAAY*RXTCPP 833
           S++   VA   R   IP + P    +ALS      Y   T PP
Sbjct: 79  SSVSLQVANLLRLFHIPQISPASTAKALSDKTRFDYFARTVPP 121


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = +3

Query: 705 STLKSXVAKPDRTIKIPGVPPXKLPRALSCSDPAAY*RXTCPP 833
           S++   VA   R   IP + P    +ALS      Y   T PP
Sbjct: 169 SSVSLQVANLLRLFHIPQISPASTAKALSDKTRFDYFARTVPP 211


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -1

Query: 119 LGIIICHPGCXLQLVCLYNNLK 54
           L I IC PGC  +L  L N  K
Sbjct: 62  LCIKICAPGCVCRLGYLRNKKK 83


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -1

Query: 119 LGIIICHPGCXLQLVCLYNNLK 54
           L I IC PGC  +L  L N  K
Sbjct: 62  LCIKICAPGCVCRLGYLRNKKK 83


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 135 FQCLGPGYYYLPS 97
           F C G G +YLPS
Sbjct: 232 FLCKGDGKWYLPS 244


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -1

Query: 428 EKTSHTSTLNLKHKM 384
           ++  H+STL++ HKM
Sbjct: 238 DENRHSSTLDIDHKM 252


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,974
Number of Sequences: 438
Number of extensions: 4134
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29509116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)