Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_L16
         (902 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0962 + 33114226-33114684,33114806-33114853,33115166-331152...    30   2.2  
04_03_0964 - 21290107-21290667,21290780-21291130,21291230-212914...    30   2.9  
01_01_0553 - 4067921-4068180,4068437-4068455,4069101-4070225           29   3.8  
05_01_0120 - 828834-831143                                             29   5.1  
03_06_0144 - 31969609-31969866,31969961-31970371,31970472-319705...    28   8.8  

>02_05_0962 +
           33114226-33114684,33114806-33114853,33115166-33115286,
           33115760-33116008,33116149-33116302,33116493-33116985,
           33117524-33117596,33118285-33118343
          Length = 551

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -1

Query: 548 GGGGGXFFXXXXXPPPPP 495
           GGGGG F      PPPPP
Sbjct: 55  GGGGGGFLRLRSAPPPPP 72



 Score = 28.7 bits (61), Expect = 6.7
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -3

Query: 549 GGGGGXFFXXXXFXPPPPPXK 487
           GGGGG  F      PPPPP +
Sbjct: 54  GGGGGGGFLRLRSAPPPPPSR 74



 Score = 28.3 bits (60), Expect = 8.8
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 496 GGGGGKXXXXKKXPPPPP 549
           GGGGG     +  PPPPP
Sbjct: 55  GGGGGGFLRLRSAPPPPP 72


>04_03_0964 -
           21290107-21290667,21290780-21291130,21291230-21291411,
           21291505-21291631,21291956-21292168,21292627-21292755,
           21292891-21293616
          Length = 762

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +2

Query: 494 GGGGGXXXXXKKKXPPPPP 550
           GGGGG      +K PPPPP
Sbjct: 17  GGGGGEGTRSGRKKPPPPP 35


>01_01_0553 - 4067921-4068180,4068437-4068455,4069101-4070225
          Length = 467

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -1

Query: 548 GGGGGXFFXXXXXPPPPP 495
           GGGGG F      PPPPP
Sbjct: 23  GGGGGGFSPTAAKPPPPP 40


>05_01_0120 - 828834-831143
          Length = 769

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 494 GGGGGXXXXXKKKXPPPPP 550
           GGGGG      ++ PPPPP
Sbjct: 42  GGGGGAGAGQARRIPPPPP 60


>03_06_0144 -
           31969609-31969866,31969961-31970371,31970472-31970542,
           31970637-31970723,31970816-31971389
          Length = 466

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +1

Query: 499 GGGGKXXXXKKXPPPPP 549
           GGGG+     K PPPPP
Sbjct: 55  GGGGRDTSGPKPPPPPP 71


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,470,341
Number of Sequences: 37544
Number of extensions: 313958
Number of successful extensions: 1367
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)