Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_L16
         (902 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024809-7|AAF59540.1|  315|Caenorhabditis elegans Hypothetical ...    29   3.4  
Z66565-6|CAA91483.1|  165|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AC024847-11|AAO21416.1|  453|Caenorhabditis elegans Ground-like ...    28   7.9  
AC024847-10|AAF60859.1|  393|Caenorhabditis elegans Ground-like ...    28   7.9  

>AC024809-7|AAF59540.1|  315|Caenorhabditis elegans Hypothetical
           protein Y53G8AR.9 protein.
          Length = 315

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 496 GGGGGKXXXXKKXPPPPPXFXXXGEKK 576
           GG GG      + PPPPP +   G ++
Sbjct: 199 GGSGGSGGGSGRFPPPPPPYGGGGRRR 225


>Z66565-6|CAA91483.1|  165|Caenorhabditis elegans Hypothetical
           protein T04F8.8 protein.
          Length = 165

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 549 GGGGGXFFXXXXFXPPPPP 493
           GGGGG +     + PPPPP
Sbjct: 83  GGGGGGYGRPQGYVPPPPP 101


>AC024847-11|AAO21416.1|  453|Caenorhabditis elegans Ground-like
           (grd related) protein16, isoform b protein.
          Length = 453

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 549 GGGGGXFFXXXXFXPPPPP 493
           GGGGG +       PPPPP
Sbjct: 50  GGGGGSYAAAPALPPPPPP 68


>AC024847-10|AAF60859.1|  393|Caenorhabditis elegans Ground-like
           (grd related) protein16, isoform a protein.
          Length = 393

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 549 GGGGGXFFXXXXFXPPPPP 493
           GGGGG +       PPPPP
Sbjct: 50  GGGGGSYAAAPALPPPPPP 68


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,028,250
Number of Sequences: 27780
Number of extensions: 166460
Number of successful extensions: 515
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 389
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)