Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_L15
         (880 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0223 - 18391177-18391287,18391570-18392081,18392200-183930...    32   0.70 
08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165     30   2.8  
10_07_0188 + 13921731-13921938,13922076-13922338,13922463-13923257     29   4.9  
09_06_0323 - 22337217-22337450,22338263-22339204                       29   6.5  
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343     29   6.5  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   8.6  
01_01_0172 + 1485170-1485176,1485480-1485511,1485622-1485870,148...    28   8.6  

>06_03_0223 -
           18391177-18391287,18391570-18392081,18392200-18393019,
           18393603-18393671,18393973-18394062,18395381-18395575
          Length = 598

 Score = 31.9 bits (69), Expect = 0.70
 Identities = 14/22 (63%), Positives = 14/22 (63%)
 Frame = +2

Query: 626 WKLPRALSCSDPAAYGYCPPFS 691
           W   RA SCSDPAA G  PP S
Sbjct: 2   WLATRASSCSDPAAAGLVPPKS 23


>08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165
          Length = 430

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -3

Query: 629 SRGKRLVSL*SCRVSPPLT*ASIFVMLVQGGGAYGKTPAT 510
           SRGK L+S  + R  PP   + + V+ + GGG  G  P T
Sbjct: 25  SRGKSLLSPSTPRSPPPSYGSIVTVLSIDGGGVRGIIPGT 64


>10_07_0188 + 13921731-13921938,13922076-13922338,13922463-13923257
          Length = 421

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 14/45 (31%), Positives = 18/45 (40%)
 Frame = +2

Query: 665 AYGYCPPFSLREAWRFLIAHAVGISVRCRSFAPSWAVCTNPPFSP 799
           AY Y PP+ L+  W    +      V        W VC  PP +P
Sbjct: 210 AYAYAPPYVLQPGW----SQGYPYDVAAAPPTAPWPVCWAPPSAP 250


>09_06_0323 - 22337217-22337450,22338263-22339204
          Length = 391

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +1

Query: 580 GGETRQDYKDTRRFPLEAPSCALLFRPCRLRILSAFLPS-GSVALSHSSRCRY 735
           GGE  ++    RRF   AP  ALL R  +LR   A   +  + A++HS+RCR+
Sbjct: 166 GGEAAREL--ARRFAA-APRRALLSRREQLRAAPASPAAMAAAAVAHSTRCRF 215


>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
          Length = 356

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = +3

Query: 345 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 500
           P PRS  RC      GCG R Q TQR     P N  IT   E TC   ++  P  +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +3

Query: 294 NESAN---ARGEAVCVLGALPLPRSLTRCAR 377
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


>01_01_0172 +
           1485170-1485176,1485480-1485511,1485622-1485870,
           1486350-1487813,1487906-1487959
          Length = 601

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 16/59 (27%), Positives = 23/59 (38%)
 Frame = +2

Query: 626 WKLPRALSCSDPAAYGYCPPFSLREAWRFLIAHAVGISVRCRSFAPSWAVCTNPPFSPT 802
           WK  R L  +    YG CP  +       +  H V + VR  +  P+  +    P  PT
Sbjct: 96  WKFHRDLPATPVFVYGQCPDSATFPGPTIMARHDVPLFVRWENHLPASHILPWDPTVPT 154


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,308,780
Number of Sequences: 37544
Number of extensions: 485689
Number of successful extensions: 1419
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1419
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)