Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_L15
         (880 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024859-11|AAK29981.1|  933|Caenorhabditis elegans Hypothetical...    31   0.82 
AC024859-10|ABA00158.1|  832|Caenorhabditis elegans Hypothetical...    31   0.82 
U53336-10|AAA96182.2|  125|Caenorhabditis elegans Hypothetical p...    30   2.5  

>AC024859-11|AAK29981.1|  933|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.15a protein.
          Length = 933

 Score = 31.5 bits (68), Expect = 0.82
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +1

Query: 685 FLPSGSVALSHS-SRCRYLSSV*VVRSKLGCVHEPPVQPDRCXLSGTIVLSXPGRPXXP 858
           F+   S+A+  S  RC+ L+++ V   KL  V +P +Q  +  +        PG P  P
Sbjct: 709 FIRDQSIAVDQSLRRCKALANIMVTMKKLAMVQDPSIQRRKKHVERADSAGAPGSPRLP 767


>AC024859-10|ABA00158.1|  832|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.15b protein.
          Length = 832

 Score = 31.5 bits (68), Expect = 0.82
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +1

Query: 685 FLPSGSVALSHS-SRCRYLSSV*VVRSKLGCVHEPPVQPDRCXLSGTIVLSXPGRPXXP 858
           F+   S+A+  S  RC+ L+++ V   KL  V +P +Q  +  +        PG P  P
Sbjct: 608 FIRDQSIAVDQSLRRCKALANIMVTMKKLAMVQDPSIQRRKKHVERADSAGAPGSPRLP 666


>U53336-10|AAA96182.2|  125|Caenorhabditis elegans Hypothetical
           protein K07C11.10 protein.
          Length = 125

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = -3

Query: 764 LERTTYTELRYLQREL*ESATLPEGRKADSIRKRQGRNRRAHEGAS 627
           L+  T  +L  +QRE  E   +PEG+KA +    +  + +++EG S
Sbjct: 66  LKTITTQKLEKMQREQMERLQVPEGQKARTPESAEAESPKSNEGPS 111


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,776,735
Number of Sequences: 27780
Number of extensions: 366829
Number of successful extensions: 928
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)