Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_L14
         (897 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2BBJ9 Cluster: Putative uncharacterized protein; n=1; ...    35   3.2  
UniRef50_Q82V69 Cluster: Putative uncharacterized protein; n=2; ...    33   7.5  
UniRef50_A6EP00 Cluster: DNA topoisomerase IV subunit B; n=1; un...    33   7.5  
UniRef50_A1ZEF6 Cluster: Lipoprotein, putative; n=1; Microscilla...    33   9.9  
UniRef50_Q2LYV3 Cluster: GA20646-PA; n=1; Drosophila pseudoobscu...    33   9.9  

>UniRef50_Q2BBJ9 Cluster: Putative uncharacterized protein; n=1;
           Bacillus sp. NRRL B-14911|Rep: Putative uncharacterized
           protein - Bacillus sp. NRRL B-14911
          Length = 192

 Score = 34.7 bits (76), Expect = 3.2
 Identities = 19/55 (34%), Positives = 30/55 (54%)
 Frame = +3

Query: 339 DPDNKTFLPIGSKEIGTVYPKNIFTKVVKINKINSPREQLAEFRKDHYFDRFRGD 503
           D   K  L  GS+ I + YP   F KV  I +  +  + L+ F++DH+ DR+ G+
Sbjct: 17  DSIEKGHLNSGSELIKSYYP---FQKVEYIKRTYTKADMLSIFQRDHFIDRYSGE 68


>UniRef50_Q82V69 Cluster: Putative uncharacterized protein; n=2;
           Nitrosomonadaceae|Rep: Putative uncharacterized protein
           - Nitrosomonas europaea
          Length = 404

 Score = 33.5 bits (73), Expect = 7.5
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
 Frame = -2

Query: 389 SSNFFRTNGKKSFII---RVPIKFKIWILVERPLTQFINNTFGHVTKPFV-TVWSHTSWN 222
           + +F  T+G  +F+    R   K + W LV+  L  F+N    H+   F+ ++W+ T +N
Sbjct: 178 TQDFIATSGGATFVTPNTRENAKLQYWSLVDMTLYYFLNPKDSHLLDFFMQSLWTATQYN 237

Query: 221 TSGNR 207
             G R
Sbjct: 238 PLGQR 242


>UniRef50_A6EP00 Cluster: DNA topoisomerase IV subunit B; n=1;
           unidentified eubacterium SCB49|Rep: DNA topoisomerase IV
           subunit B - unidentified eubacterium SCB49
          Length = 47

 Score = 33.5 bits (73), Expect = 7.5
 Identities = 18/45 (40%), Positives = 27/45 (60%)
 Frame = +1

Query: 220 VFQDV*DHTVTNGLVTCPKVLLINCVKGRSTSIQILNFIGTLIIK 354
           VF D    ++T   V C  V +++ VK  S+S+++LN IG  IIK
Sbjct: 3   VFIDTLQFSITTKEVACFNVKILSEVKHNSSSVEVLNNIGYNIIK 47


>UniRef50_A1ZEF6 Cluster: Lipoprotein, putative; n=1; Microscilla
           marina ATCC 23134|Rep: Lipoprotein, putative -
           Microscilla marina ATCC 23134
          Length = 407

 Score = 33.1 bits (72), Expect = 9.9
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
 Frame = +3

Query: 231 RMRPYRYKRFSDVPEGIINKLRQRAFHKY--PDL--EFYWDPDNKTFLPIGSKEIGTVYP 398
           ++RP+R K       G INK +   F+ +  PD    F + P+   ++  G + IG +  
Sbjct: 113 KIRPWRDKEI-----GHINKEKHNLFYPFSGPDFLNAFLYFPNCDNYIMFGLEPIGELPK 167

Query: 399 KNIFTKVVKINKINSPREQLAEFRKDHYF 485
            +I  K    N +   RE LAE  K +YF
Sbjct: 168 FDIKDKKFLKNYLYRSREALAELLKRNYF 196


>UniRef50_Q2LYV3 Cluster: GA20646-PA; n=1; Drosophila
           pseudoobscura|Rep: GA20646-PA - Drosophila pseudoobscura
           (Fruit fly)
          Length = 986

 Score = 33.1 bits (72), Expect = 9.9
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +3

Query: 396 PKNIFTKVVKINKINSPREQLAEFRKDHYFDRFRGDFESTFS-VPVSPQKPN 548
           PK +F+K + + +    R  L+E+ KD    RFR  F+ +   VP+   K N
Sbjct: 211 PKEVFSKRIDLEEYYKQRGFLSEYIKDFRLRRFRHQFDQSLPLVPLEQYKAN 262


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 668,415,229
Number of Sequences: 1657284
Number of extensions: 12586885
Number of successful extensions: 32881
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 31859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32879
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 81161904978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)