Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_L13
(891 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1458 + 26677557-26677616,26677712-26677809,26678569-266786... 161 9e-40
03_03_0283 - 16192534-16192656,16192979-16193161,16193336-161934... 161 9e-40
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 31 1.2
06_03_1221 - 28514952-28518152 30 2.8
08_02_1556 - 27852247-27852738,27853005-27853197,27854006-278540... 29 5.0
09_06_0198 - 21496692-21496991,21497111-21497258,21497341-214975... 28 8.7
06_02_0164 + 12498614-12498699,12498806-12498842,12499388-124995... 28 8.7
04_04_1565 - 34451411-34451875,34454077-34455249,34455340-34455402 28 8.7
>07_03_1458 +
26677557-26677616,26677712-26677809,26678569-26678668,
26678841-26679023,26679347-26679469
Length = 187
Score = 161 bits (390), Expect = 9e-40
Identities = 74/168 (44%), Positives = 116/168 (69%), Gaps = 2/168 (1%)
Frame = +1
Query: 208 GKLLXLDAKKVNSELLTLTYGALVSQMLKETENTEDVNKHLERIGYNMGVRLIEDFLART 387
G L ++VN+EL TLTYGA+V Q+L + E E+VNK L+++GYN+G RL+++FLA++
Sbjct: 10 GDALFGSVERVNAELFTLTYGAIVRQLLTDLEEVEEVNKQLDQMGYNIGTRLVDEFLAKS 69
Query: 388 TSTRCLEMRETADKIQQ-AFKLYLSMQPTVTSWSSAGDEFSLVWDHCPLSEWVEMPSN-N 561
+RC++ +ETAD I + FK++L + TVT+W + G S V + PL ++VE+P
Sbjct: 70 NVSRCVDFKETADVIAKLGFKMFLGVTATVTNWDAEGTSCSFVLEDNPLVDFVELPDTCQ 129
Query: 562 GLKYCALIPGAIRGALQMVQLDVQCWFVQDQLKGDPVTELRVKYLKEI 705
GL+YC ++ G IRGAL+MV + + +V+D L+GD E+RVK K++
Sbjct: 130 GLQYCNVLSGVIRGALEMVSMKTEVTWVRDMLRGDDAYEMRVKLTKQV 177
>03_03_0283 -
16192534-16192656,16192979-16193161,16193336-16193435,
16194627-16194724,16194841-16194900
Length = 187
Score = 161 bits (390), Expect = 9e-40
Identities = 74/168 (44%), Positives = 116/168 (69%), Gaps = 2/168 (1%)
Frame = +1
Query: 208 GKLLXLDAKKVNSELLTLTYGALVSQMLKETENTEDVNKHLERIGYNMGVRLIEDFLART 387
G L ++VN+EL TLTYGA+V Q+L + E E+VNK L+++GYN+G RL+++FLA++
Sbjct: 10 GDALFGSVERVNAELFTLTYGAIVRQLLTDLEEVEEVNKQLDQMGYNIGTRLVDEFLAKS 69
Query: 388 TSTRCLEMRETADKIQQ-AFKLYLSMQPTVTSWSSAGDEFSLVWDHCPLSEWVEMPSN-N 561
+RC++ +ETAD I + FK++L + TVT+W + G S V + PL ++VE+P
Sbjct: 70 NVSRCVDFKETADVIAKLGFKMFLGVTATVTNWDAEGTSCSFVLEDNPLVDFVELPDTCQ 129
Query: 562 GLKYCALIPGAIRGALQMVQLDVQCWFVQDQLKGDPVTELRVKYLKEI 705
GL+YC ++ G IRGAL+MV + + +V+D L+GD E+RVK K++
Sbjct: 130 GLQYCNVLSGVIRGALEMVSMKTEVTWVRDMLRGDDAYEMRVKLTKQV 177
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 31.1 bits (67), Expect = 1.2
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -2
Query: 695 KYFTLNSVTGSPFN*SCTNQHCTSSCTICRAPLIAP 588
+ F ++ G+P N C N +CT +C + + PL P
Sbjct: 521 RQFPCQNLCGNPLN--CGNHYCTKACHVLQIPLSQP 554
>06_03_1221 - 28514952-28518152
Length = 1066
Score = 29.9 bits (64), Expect = 2.8
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Frame = +1
Query: 166 KVIQILQHISTKCLGKL-LXLDAKKVNSELLTLTYGALVSQMLKETENTEDVNKHLE-RI 339
K +Q LQ S + G+L AK N L LTY ++ E+ + K E R+
Sbjct: 251 KPLQRLQLPSNQIEGRLDPERIAKLTNLITLDLTYNMFTGEL---PESISQLTKLEELRL 307
Query: 340 GYNMGVRLIEDFLARTTSTRCLEMRETA 423
G+N + L+ TS RCL++R +
Sbjct: 308 GHNDFTGTLPPALSNWTSLRCLDLRSNS 335
>08_02_1556 -
27852247-27852738,27853005-27853197,27854006-27854070,
27854161-27854199,27854572-27854592,27854819-27855052,
27855420-27855504,27855953-27856026,27856516-27856647,
27856735-27856834,27857296-27857361,27857472-27857509,
27858013-27858219,27858378-27858427,27858871-27858940,
27859065-27859133,27859456-27859530,27860456-27860530,
27860887-27860934
Length = 710
Score = 29.1 bits (62), Expect = 5.0
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = -2
Query: 548 ISTHSLSGQWSQTSENSSPALLQLV 474
+ST + + SQTS NSSP LLQ++
Sbjct: 419 VSTSNTTSGQSQTSNNSSPILLQML 443
>09_06_0198 - 21496692-21496991,21497111-21497258,21497341-21497578,
21497679-21497889,21497977-21498170,21498263-21498364,
21498525-21499879,21501193-21501494,21501600-21501750,
21501838-21502102,21502155-21502362,21502467-21502660,
21502749-21502850,21503481-21503680,21504010-21504846,
21505806-21506107,21506209-21506359,21506447-21506684,
21506764-21506971,21507078-21507271,21507322-21507462,
21513484-21514811,21515923-21516227,21516331-21516481,
21516570-21516807,21516881-21517088,21517197-21517366,
21517451-21517549,21517708-21519029,21521601-21521683
Length = 3314
Score = 28.3 bits (60), Expect = 8.7
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = +1
Query: 373 FLARTTSTRCLEMRETADKIQQAFKLYLSMQPTVTSWSSAGDEFSLVWDHCPLSEWVEMP 552
+LA T +T L++ + D+I ++ PT +S+G+ L WD SEW+
Sbjct: 2705 YLAATGTTIYLDVVDNDDEIYVKLRVSDGASPTRYVMTSSGEFQLLGWDKSS-SEWITFS 2763
Query: 553 S 555
S
Sbjct: 2764 S 2764
>06_02_0164 +
12498614-12498699,12498806-12498842,12499388-12499544,
12499964-12500181,12500965-12501891
Length = 474
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/32 (46%), Positives = 23/32 (71%), Gaps = 3/32 (9%)
Frame = -1
Query: 378 QEVLYQSNAHVVSDSLKMF---VYIFSVFCFF 292
++VL+Q NA ++S+ M+ VYIFS+FC F
Sbjct: 115 RQVLHQENAEA-ANSVSMWMGTVYIFSLFCAF 145
>04_04_1565 - 34451411-34451875,34454077-34455249,34455340-34455402
Length = 566
Score = 28.3 bits (60), Expect = 8.7
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = +1
Query: 316 VNKHLERIGYNMGVRLIEDFLARTTSTRCLEMRETADKIQQAFKLYLSMQPTVT 477
V+K+L I + G+R + FLA S RE D + +A +YL PT+T
Sbjct: 367 VDKYLGEISPDHGLR-VSKFLAVAESLPD-SARECYDGVYRALDIYLESHPTLT 418
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,151,223
Number of Sequences: 37544
Number of extensions: 359437
Number of successful extensions: 889
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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