Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_L13
         (891 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z22176-4|CAA80133.1|  181|Caenorhabditis elegans Hypothetical pr...   121   8e-28
Z93372-3|CAB07545.1|  601|Caenorhabditis elegans Hypothetical pr...    30   2.6  
U42841-14|AAC48172.3|  469|Caenorhabditis elegans Hypothetical p...    29   3.4  
Z68006-7|CAA91995.2|  783|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U88310-1|AAB42340.1|  663|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AF497831-1|AAM18109.1|  783|Caenorhabditis elegans putative Na-H...    29   4.5  
Z50016-2|CAC42346.1|  487|Caenorhabditis elegans Hypothetical pr...    29   5.9  
Z50016-1|CAA90318.1| 1106|Caenorhabditis elegans Hypothetical pr...    29   5.9  
AF151640-1|AAD42382.1|  487|Caenorhabditis elegans ionotropic GA...    29   5.9  
AF047658-4|AAC04417.1|  392|Caenorhabditis elegans Hypothetical ...    29   5.9  
AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical...    28   7.8  

>Z22176-4|CAA80133.1|  181|Caenorhabditis elegans Hypothetical
           protein ZK1098.5 protein.
          Length = 181

 Score =  121 bits (291), Expect = 8e-28
 Identities = 61/140 (43%), Positives = 95/140 (67%), Gaps = 5/140 (3%)
 Frame = +1

Query: 226 DAKKVNSELLTLTYGALVSQMLKETENTEDVNKHLERIGYNMGVRLIEDFLARTTST-RC 402
           D+KK+++EL  LTYGA+V++MLK+ E+ +DV   L+++G+NMG RL +DFLA+  +  RC
Sbjct: 11  DSKKMSAELFCLTYGAMVTEMLKDYEDPKDVTIQLDKMGFNMGTRLADDFLAKNANVPRC 70

Query: 403 LEMRETADKI-QQAFKLYLSMQPTVTSWSSAGDEFSLVWDHCPLSEWVEMPS---NNGLK 570
           ++ R+ AD + + A   YL +  T +SW+S   EF++  +  PL+E V++P+   + GL 
Sbjct: 71  VDTRQIADVLCRNAIPCYLGISATASSWTSGDREFTITLEANPLTELVQVPAHLVSAGLS 130

Query: 571 YCALIPGAIRGALQMVQLDV 630
           Y  LI GAIRGAL+ V   V
Sbjct: 131 YSQLIAGAIRGALEAVHFKV 150


>Z93372-3|CAB07545.1|  601|Caenorhabditis elegans Hypothetical
           protein BE10.3 protein.
          Length = 601

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 16/38 (42%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
 Frame = +1

Query: 145 ELYETVKKVIQILQHISTKCLGKL-LXLDAKKVNSELL 255
           +++E VK + +IL+++ST  +GKL L L  K +N  LL
Sbjct: 28  KVFENVKILEKILENVSTDAMGKLDLRLVNKNINIALL 65


>U42841-14|AAC48172.3|  469|Caenorhabditis elegans Hypothetical
           protein T17H7.7 protein.
          Length = 469

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 274 LVSQMLKETENTEDVNKHLERIGYNMGVRLIE 369
           L S   +  ENT D+NK L++I  N  + L+E
Sbjct: 428 LASDYRRRLENTGDINKILQKISENAYISLVE 459


>Z68006-7|CAA91995.2|  783|Caenorhabditis elegans Hypothetical
           protein K09C8.1 protein.
          Length = 783

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = -2

Query: 491 ALLQLVTVGCMLRYSLKACCILSAVSLISKQRVDVVRARKSSISLTPMLY 342
           ALL L+ VG M +Y+L    IL+  SL++      V A    + +  MLY
Sbjct: 216 ALLILIWVGIMGKYNLSVMDILTFASLVAAVDPVAVLAVFQEVGVNKMLY 265


>U88310-1|AAB42340.1|  663|Caenorhabditis elegans Hypothetical
           protein C24G7.4 protein.
          Length = 663

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -3

Query: 592 HRESKRNISGRYYLASPPIH*VD-NGPKQAKTHL 494
           H+ S++N +  YY +SPPI  ++    KQ+KT L
Sbjct: 623 HQTSRQNSTENYYSSSPPIFTIEPMSRKQSKTSL 656


>AF497831-1|AAM18109.1|  783|Caenorhabditis elegans putative Na-H
           exchanger isoform 7 protein.
          Length = 783

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = -2

Query: 491 ALLQLVTVGCMLRYSLKACCILSAVSLISKQRVDVVRARKSSISLTPMLY 342
           ALL L+ VG M +Y+L    IL+  SL++      V A    + +  MLY
Sbjct: 216 ALLILIWVGIMGKYNLSVMDILTFASLVAAVDPVAVLAVFQEVGVNKMLY 265


>Z50016-2|CAC42346.1|  487|Caenorhabditis elegans Hypothetical
           protein T21C12.1b protein.
          Length = 487

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
 Frame = -2

Query: 554 LGISTHSLSGQWSQTSENSSPALLQLVTVGCMLR--YSLKACCIL--SAVSLISKQRVDV 387
           LG++T          + +S P +  + ++   L   + +  C +L  +AV  ISK R+ +
Sbjct: 282 LGVTTVLTMTTLMTMTNSSMPKVSYVKSIDIFLGVCFMMVFCSLLEYAAVGYISK-RMKL 340

Query: 386 VRARKSSISLTPM 348
           VRARK S  LTP+
Sbjct: 341 VRARKESRMLTPL 353


>Z50016-1|CAA90318.1| 1106|Caenorhabditis elegans Hypothetical
           protein T21C12.1a protein.
          Length = 1106

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
 Frame = -2

Query: 554 LGISTHSLSGQWSQTSENSSPALLQLVTVGCMLR--YSLKACCIL--SAVSLISKQRVDV 387
           LG++T          + +S P +  + ++   L   + +  C +L  +AV  ISK R+ +
Sbjct: 294 LGVTTVLTMTTLMTMTNSSMPKVSYVKSIDIFLGVCFMMVFCSLLEYAAVGYISK-RMKL 352

Query: 386 VRARKSSISLTPM 348
           VRARK S  LTP+
Sbjct: 353 VRARKESRMLTPL 365


>AF151640-1|AAD42382.1|  487|Caenorhabditis elegans ionotropic GABA
           receptor subunitUNC-49A protein.
          Length = 487

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
 Frame = -2

Query: 554 LGISTHSLSGQWSQTSENSSPALLQLVTVGCMLR--YSLKACCIL--SAVSLISKQRVDV 387
           LG++T          + +S P +  + ++   L   + +  C +L  +AV  ISK R+ +
Sbjct: 282 LGVTTVLTMTTLMTMTNSSMPKVSYVKSIDIFLGVCFMMVFCSLLEYAAVGYISK-RMKL 340

Query: 386 VRARKSSISLTPM 348
           VRARK S  LTP+
Sbjct: 341 VRARKESRMLTPL 353


>AF047658-4|AAC04417.1|  392|Caenorhabditis elegans Hypothetical
           protein K03H6.1 protein.
          Length = 392

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 216 KFAETFCRNVLKNLYNFLYSFV 151
           KFA+TF   +LK  Y F++ +V
Sbjct: 19  KFAQTFFSQILKQFYRFIWQYV 40


>AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical
            protein Y45F10B.10 protein.
          Length = 1592

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 556  NNGLKYCALIPGAIRGALQMVQLDV-QCWFVQDQLKGDPVTELR 684
            +N  KY A   G   G + +  L+V QC F   Q KGDP+T +R
Sbjct: 1173 SNDDKYAAC--GTNNGIVALWDLEVCQCVFTTIQNKGDPITCIR 1214


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,973,938
Number of Sequences: 27780
Number of extensions: 330221
Number of successful extensions: 987
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)