Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_L11
         (891 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   2.4  
DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.      23   2.4  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    22   7.4  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    22   7.4  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    22   7.4  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   7.4  
EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    21   9.8  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    21   9.8  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 455  AWFFHFRQCHHNNNHFTVIQKQFTNV 378
            A ++H R   HNN  F V + +F  +
Sbjct: 1557 ACWYHLRVTAHNNAGFNVAEYEFATL 1582


>DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.
          Length = 162

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = +1

Query: 643 SKTWSTSRHCCCSLSGSYRRAKLS 714
           SK W   R C C      R A +S
Sbjct: 78  SKIWQMERSCMCCQESGEREASVS 101


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = +3

Query: 96  TCSTRPTQISLYDRIYLSNFNTSIKGSLYA*NHIIDCY 209
           T +T  T  S  +   L  FN S    LY  +  ID Y
Sbjct: 10  TTTTTTTTSSALNSTPLIEFNISTSNYLYTPSSTIDLY 47


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = +3

Query: 96  TCSTRPTQISLYDRIYLSNFNTSIKGSLYA*NHIIDCY 209
           T +T  T  S  +   L  FN S    LY  +  ID Y
Sbjct: 10  TTTTTTTTSSALNSTPLIEFNISTSNYLYTPSSTIDLY 47


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +3

Query: 528 QRASLPVRTARLLQRSRTQTPSEGGVSDG 614
           Q +  P  ++   +   T+TP  G  SDG
Sbjct: 413 QASEQPTESSTTQKPQTTKTPESGNESDG 441


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -1

Query: 600 PLPTESECGNAEVSAPCVRAGWP 532
           P P     G+  VS PC  +G P
Sbjct: 212 PYPPPGSLGSMGVSVPCGTSGNP 234


>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 108 ELSTCGALLRTIACAPSYKTQN 43
           EL TCG  L   A  P + T+N
Sbjct: 50  ELKTCGNGLAFDASDPKFLTEN 71


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 108 ELSTCGALLRTIACAPSYKTQN 43
           EL TCG  L   A  P + T+N
Sbjct: 50  ELKTCGNGLAFDASDPKFLTEN 71


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,773
Number of Sequences: 336
Number of extensions: 3359
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24720487
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)