Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_L11
         (891 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    29   0.67 
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc...    27   2.7  
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p...    27   4.7  
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p...    26   8.3  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    26   8.3  
SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4 |S...    26   8.3  

>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +3

Query: 507 TMLNGQAQRASLPVRTARL-LQRSRTQTPSEGGVSDGNASPAP 632
           T L    ++ ++P++TA   L  S+TQ PS G  ++G   P P
Sbjct: 267 TGLTWSTKQDAVPLKTALANLSASKTQAPSSGDSANGGLPPPP 309


>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 457

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
 Frame = +2

Query: 275 IRQLQKFQWEEAVYELVLNY----LLKIFS-SNRFLKKIK 379
           + Q+ KF W+   Y  V+N     L K+F+  NR++K ++
Sbjct: 335 LNQMNKFHWKRKGYSFVINVLSIALYKLFTPKNRYMKALE 374


>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 277

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
 Frame = +3

Query: 543 PVRTARLLQRSRTQTPSEGGVSDGNASPAPASLLQDVVDI-KTLLLQLKRVLQESETLDP 719
           P R+ R     ++ +P     SDG+  P+P S+      I  ++    K  L  + T  P
Sbjct: 152 PTRSTRSSSHIQSLSPESKQTSDGHRPPSPTSITTTSTSIDPSVAFSSKSTLATTRTNAP 211

Query: 720 L 722
           L
Sbjct: 212 L 212


>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = +1

Query: 478 LSKALWPKWSLCSTAK-HKGPACPYARRAYFSVPALRL 588
           L  A W +  LC      +G  CPY RR YF +   +L
Sbjct: 573 LKLAEWDRTLLCDGYLCQQGGDCPYWRRRYFQLIGSKL 610


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 460 YWRRRRLSKALWPKWSLCSTAKHKGPACPYARR-AYFSVPA 579
           YW R  L+K +W +  + S    +    P+ +R A F +P+
Sbjct: 658 YWIRNLLAKTVWDRERMLSVINQQLADIPFQKRDAEFILPS 698


>SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 19/103 (18%), Positives = 46/103 (44%)
 Frame = +3

Query: 465 EKEAPVKGIVAQVVTMLNGQAQRASLPVRTARLLQRSRTQTPSEGGVSDGNASPAPASLL 644
           E+ A  + +  ++  +   QA+  S      RLL   +     +GG+ + + S   +SL+
Sbjct: 197 EEVAEEEALFIELKRIETSQAKLLSDRDEVLRLLDEQK----GDGGIHEYHTSAGMSSLI 252

Query: 645 QDVVDIKTLLLQLKRVLQESETLDPLLAACAESPARGNGRRPP 773
           QD+++ +    +++  +  S      +++   +P R +    P
Sbjct: 253 QDMINSQRTKNKVEEAIVSSSAPSSGVSSVLNTPTRPHALSTP 295


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,048,692
Number of Sequences: 5004
Number of extensions: 56987
Number of successful extensions: 154
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)