Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_L11
         (891 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006672-4|AAK84542.1|  151|Caenorhabditis elegans Hypothetical ...    31   0.84 
Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein...    29   4.5  
U21310-2|AAA62521.1|  322|Caenorhabditis elegans T box family pr...    29   5.9  
AL132877-10|CAB60850.1|  402|Caenorhabditis elegans Hypothetical...    28   7.8  

>AC006672-4|AAK84542.1|  151|Caenorhabditis elegans Hypothetical
           protein K08D12.3a protein.
          Length = 151

 Score = 31.5 bits (68), Expect = 0.84
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +2

Query: 422 CDDTGENGKTKRGIGEGGACQRHCGPSGHYAQR-PSTKGQ 538
           C   G  G  + G G GG+C  +CG  GHY++  PS + +
Sbjct: 50  CPKGGSGGGQRGGGGGGGSCY-NCGGRGHYSRDCPSARSE 88


>Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical protein
            C10C6.1 protein.
          Length = 1565

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 18/72 (25%), Positives = 32/72 (44%)
 Frame = +3

Query: 534  ASLPVRTARLLQRSRTQTPSEGGVSDGNASPAPASLLQDVVDIKTLLLQLKRVLQESETL 713
            A+LP  T   L R  + +PS    + G +SPA  S    +V  K+  + +  + +++   
Sbjct: 1401 ATLPSTTPSNLSRMASSSPSSSASNSGTSSPAATSSGISIVKQKSQSIAVSPLARDTRMR 1460

Query: 714  DPLLAACAESPA 749
             P  +     PA
Sbjct: 1461 SPSPSHLHHRPA 1472


>AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein
            protein.
          Length = 1565

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 18/72 (25%), Positives = 32/72 (44%)
 Frame = +3

Query: 534  ASLPVRTARLLQRSRTQTPSEGGVSDGNASPAPASLLQDVVDIKTLLLQLKRVLQESETL 713
            A+LP  T   L R  + +PS    + G +SPA  S    +V  K+  + +  + +++   
Sbjct: 1401 ATLPSTTPSNLSRMASSSPSSSASNSGTSSPAATSSGISIVKQKSQSIAVSPLARDTRMR 1460

Query: 714  DPLLAACAESPA 749
             P  +     PA
Sbjct: 1461 SPSPSHLHHRPA 1472


>U21310-2|AAA62521.1|  322|Caenorhabditis elegans T box family
           protein 11 protein.
          Length = 322

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
 Frame = +3

Query: 567 QRSRTQTP--SEGGVSDGNASPAPASLLQDVVDIKTLLLQLKRVLQESETLDPLL-AACA 737
           +R   Q+P  SEG  S+ + SP PA  ++D+       L    V+ +   L  L+    A
Sbjct: 187 RRRERQSPVYSEGTSSEKSISPPPAKKIKDMAP----ALPDYSVISKPNLLQSLIFPMIA 242

Query: 738 ESPARGNG-RRPPASPXHPDACAEM 809
           E P+       PP  P +PD   +M
Sbjct: 243 EQPSTSQSPPAPPVFPFNPDLQMQM 267


>AL132877-10|CAB60850.1|  402|Caenorhabditis elegans Hypothetical
           protein Y105E8B.4 protein.
          Length = 402

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 51  SCNSARTRSYVIGHHTCSTRPTQISLYDRIYLSNFNTSIK 170
           SC+S R +S     + C T P  I L  R  + NF + +K
Sbjct: 19  SCSSCRRQSSTSQKNECMTNPGSIVLTQRWTVCNFESLLK 58


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,244,673
Number of Sequences: 27780
Number of extensions: 334756
Number of successful extensions: 1085
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1083
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)