Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_L11
         (891 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   0.70 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.8  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    23   2.8  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   4.9  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   4.9  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 25.4 bits (53), Expect = 0.70
 Identities = 26/97 (26%), Positives = 41/97 (42%)
 Frame = +3

Query: 426 MTLAKMEKPSVVLEKEAPVKGIVAQVVTMLNGQAQRASLPVRTARLLQRSRTQTPSEGGV 605
           +TLAKMEK S  L      +     +V + N        P       + S+T   S   V
Sbjct: 297 LTLAKMEKTSKPLPMVDNPES-TGNLVYIYNN-------PFSDVEERRVSKTAMNSNQIV 348

Query: 606 SDGNASPAPASLLQDVVDIKTLLLQLKRVLQESETLD 716
           SD + S +   L QD+++++T +      +  SE  D
Sbjct: 349 SDNSLSSSEEKLKQDILNLRTDISSSSSSISSSEEND 385


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 455  AWFFHFRQCHHNNNHFTVIQKQFTNV 378
            A ++H R   HNN  F V + +F  +
Sbjct: 1527 ATWYHLRVTAHNNAGFAVAEYEFATL 1552


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = +1

Query: 643 SKTWSTSRHCCCSLSGSYRRAKLS 714
           SK W   R C C      R A +S
Sbjct: 66  SKIWQMERSCMCCQESGEREASVS 89


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 190 ITLLIVIETCLYCGLVRNCCLVF 258
           I L I+    L   LV NCC+++
Sbjct: 58  IGLAIIYSMLLIMSLVGNCCVIW 80


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 190 ITLLIVIETCLYCGLVRNCCLVF 258
           I L I+    L   LV NCC+++
Sbjct: 58  IGLAIIYSMLLIMSLVGNCCVIW 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,755
Number of Sequences: 438
Number of extensions: 4330
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)