Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_L10
         (1122 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ...    38   0.003
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p...    38   0.003
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce...    33   0.055
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M...    33   0.096

>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 644

 Score = 37.9 bits (84), Expect = 0.003
 Identities = 23/38 (60%), Positives = 23/38 (60%)
 Frame = -1

Query: 414 RGXXQIEVTFDXDAXGIXXVSASREVQPXKEXXITITN 301
           RG  QIEVTFD DA GI  VSA  E    K   ITITN
Sbjct: 467 RGVPQIEVTFDVDANGILNVSA-LEKGTGKTQKITITN 503


>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 647

 Score = 37.9 bits (84), Expect = 0.003
 Identities = 23/38 (60%), Positives = 23/38 (60%)
 Frame = -1

Query: 414 RGXXQIEVTFDXDAXGIXXVSASREVQPXKEXXITITN 301
           RG  QIEVTFD DA GI  VSA  E    K   ITITN
Sbjct: 467 RGVPQIEVTFDVDANGILNVSA-LEKGTGKTQKITITN 503


>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 674

 Score = 33.5 bits (73), Expect = 0.055
 Identities = 18/36 (50%), Positives = 23/36 (63%)
 Frame = -1

Query: 414 RGXXQIEVTFDXDAXGIXXVSASREVQPXKEXXITI 307
           +G  QIEV+FD DA GI  VSA R+    K+  IT+
Sbjct: 510 KGQPQIEVSFDVDADGIINVSA-RDKATNKDSSITV 544


>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 663

 Score = 32.7 bits (71), Expect = 0.096
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = -1

Query: 414 RGXXQIEVTFDXDAXGIXXVSASREVQPXKEXXITITN 301
           RG  QIEVTF+ DA G+  VSA  +    K   + I N
Sbjct: 496 RGVPQIEVTFEVDANGVLTVSAVDKSGKGKPEKLVIKN 533


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,923,642
Number of Sequences: 5004
Number of extensions: 16251
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 595662418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)